Miyakogusa Predicted Gene

Lj0g3v0072839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0072839.1 CUFF.3604.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38495.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: YL1 nuclea...   179   5e-46

>AT4G38495.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: YL1 nuclear,
           C-terminal (InterPro:IPR013272); Has 279 Blast hits to
           279 proteins in 147 species: Archae - 0; Bacteria - 0;
           Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0;
           Other Eukaryotes - 17 (source: NCBI BLink). |
           chr4:18007466-18008025 REVERSE LENGTH=124
          Length = 124

 Score =  179 bits (453), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 101/124 (81%)

Query: 1   MEAEVVDAELVLPNYLSFKRVQMHEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDQPNYV 60
           ME E+++A++V+ + LSFK+ Q +EKYPK QS  R WKHLKQI+QAEN+ + PPD P YV
Sbjct: 1   MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLPTYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAA 120
           NIESPPS  PCKR+CDITGYEAPY DPRT LRYAN  VF+ +R+L +D V +YL++RNAA
Sbjct: 61  NIESPPSTQPCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNAA 120

Query: 121 VVLK 124
           VVLK
Sbjct: 121 VVLK 124