Miyakogusa Predicted Gene

Lj0g3v0072759.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0072759.1 Non Chatacterized Hit- tr|I1LLV5|I1LLV5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,66.83,0,seg,NULL;
GIY-YIG,UvrABC system subunit C, N-terminal; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,CUFF.3596.1
         (401 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30350.2 | Symbols:  | Excinuclease ABC, C subunit, N-termina...   266   2e-71
AT2G30350.1 | Symbols:  | Excinuclease ABC, C subunit, N-termina...   135   3e-32
AT5G43210.1 | Symbols:  | Excinuclease ABC, C subunit, N-termina...    52   5e-07

>AT2G30350.2 | Symbols:  | Excinuclease ABC, C subunit, N-terminal |
           chr2:12934237-12935742 REVERSE LENGTH=368
          Length = 368

 Score =  266 bits (679), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/382 (43%), Positives = 212/382 (55%), Gaps = 62/382 (16%)

Query: 40  FFACYLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFP 99
           FFACYLL SL+PR KG TYIGFTVNPRRRIRQHNGEI  GAWRTKK+RPWEMVLCIYGFP
Sbjct: 27  FFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFP 86

Query: 100 TNVSALQFEWAWQHPVESLAVRKAAVNFKSLSGIANKIKLAYTMLTLPSWENMNMTVHFF 159
           TNVSALQFEWAWQHP ES+AVR+AA  FKS SG+A+KIKL YTML LP+W ++N+TV++F
Sbjct: 87  TNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYF 146

Query: 160 STKYMKHCGGCPNLPEHMKVETGSMDELPCYTERIDGLSENEDDVEFE------------ 207
           S+KY  H G  P+LP HMKV+  +M++L  +T ++D  S+ ED+   E            
Sbjct: 147 SSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFT-KVDDSSQPEDEESPEVNEEDDDDDDDD 205

Query: 208 -NNASTSGSVPVASDDSLTLDSPKSP----NHWDRISEAFGGSKESEAREPPGHPSTTEN 262
            +N S  G+   +S D    +  K P    +  DR++   G     E        S    
Sbjct: 206 SSNLSQPGNSNTSSSDDRHFEKAKEPVTVFDEEDRLANFSGFGLLDEEETVEDEVS---- 261

Query: 263 PSLSFGLITTTPVKSSPVASSKRVGTITENPSQSFGFIXXXXXXXXXXXXXXRVEIIEDA 322
             ++ G I  T  K      + R+ + T      FG                 VEI+ED 
Sbjct: 262 -HITVGSIRATE-KEPETVFNDRLASFT-----CFGL----------------VEIVED- 297

Query: 323 DLLNVMNKSDGELSQPESVKSDAVD----VNSTFIVPHEAEIVDLSTPSPSWRNIIDXXX 378
                   S G +   E+++ +       + ST     + E++DL TPSPS R       
Sbjct: 298 ------EVSHGTIGSTEAMEKECRKRRNHITST-TTEVDVEVIDLMTPSPSCR-----AG 345

Query: 379 XXXXXXXGSNFIDLTKSPNFVQ 400
                   S FIDLT SPNF++
Sbjct: 346 SSMKRRRVSEFIDLTMSPNFIE 367


>AT2G30350.1 | Symbols:  | Excinuclease ABC, C subunit, N-terminal |
           chr2:12934237-12935325 REVERSE LENGTH=334
          Length = 334

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 148/309 (47%), Gaps = 46/309 (14%)

Query: 105 LQFEWAWQHPVESLAVRKAAVNFKSLSGIANKIKLAYTMLTLPSWENMNMTVHFFSTKYM 164
           LQFEWAWQHP ES+AVR+AA  FKS SG+A+KIKL YTML LP+W ++N+TV++FS+KY 
Sbjct: 58  LQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYFSSKYA 117

Query: 165 KHCGGCPNLPEHMKVETGSMDELPCYTERIDGLSENEDDVEFENNASTSGSVPVASDDSL 224
            H G  P+LP HMKV+  +M++L  +T ++D  S+ ED+   E N          S +  
Sbjct: 118 HHGGKSPSLPLHMKVQVCAMEDLQYFT-KVDDSSQPEDEESPEVNEEDDDDDDDDSSN-- 174

Query: 225 TLDSPKSPNHWDRISEAFGGSKESEAREPPGHPSTT--ENPSLS----FGLITTTPVKSS 278
            L  P + N        F  +KE         P T   E   L+    FGL+        
Sbjct: 175 -LSQPGNSNTSSSDDRHFEKAKE---------PVTVFDEEDRLANFSGFGLLDEEETVED 224

Query: 279 PVASSKRVGTI---TENPSQSFGFIXXXXXXXXXXXXXXRVEIIEDADLLNVMNKSDGEL 335
              S   VG+I    + P   F                  VEI+ED         S G +
Sbjct: 225 -EVSHITVGSIRATEKEPETVFN------DRLASFTCFGLVEIVED-------EVSHGTI 270

Query: 336 SQPESVKSDAVD----VNSTFIVPHEAEIVDLSTPSPSWRNIIDXXXXXXXXXXGSNFID 391
              E+++ +       + ST     + E++DL TPSPS R               S FID
Sbjct: 271 GSTEAMEKECRKRRNHITST-TTEVDVEVIDLMTPSPSCR-----AGSSMKRRRVSEFID 324

Query: 392 LTKSPNFVQ 400
           LT SPNF++
Sbjct: 325 LTMSPNFIE 333


>AT5G43210.1 | Symbols:  | Excinuclease ABC, C subunit, N-terminal |
           chr5:17347567-17348379 FORWARD LENGTH=170
          Length = 170

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 41  FACYLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPT 100
           ++ YL+ S     K  TY+G T +  RR++QHNGEI  GA  +   RPW     I GF  
Sbjct: 54  WSVYLILSTTEPIK--TYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTC 111

Query: 101 NVSALQFEWAWQHPVESLAVRK 122
              A  FE  W+     L  RK
Sbjct: 112 LSQASSFESKWKIFTRKLPRRK 133