Miyakogusa Predicted Gene
- Lj0g3v0072459.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0072459.1 tr|B9GU15|B9GU15_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_754555 PE=4
SV=1,56.32,3e-16,Armadillo/beta-catenin-like repeats,Armadillo; ARM
repeat,Armadillo-type fold; ARM_REPEAT,Armadillo;,CUFF.3584.1
(524 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22125.1 | Symbols: CSI1 | binding | chr2:9406793-9414223 FOR... 691 0.0
AT1G77460.2 | Symbols: | Armadillo/beta-catenin-like repeat ; C... 353 1e-97
AT1G77460.1 | Symbols: | Armadillo/beta-catenin-like repeat ; C... 353 1e-97
AT1G44120.1 | Symbols: | Armadillo/beta-catenin-like repeat ; C... 285 4e-77
AT3G46510.1 | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17... 76 5e-14
AT2G23140.1 | Symbols: | RING/U-box superfamily protein with AR... 72 1e-12
AT2G23140.2 | Symbols: | RING/U-box superfamily protein with AR... 71 2e-12
AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:12... 67 3e-11
AT1G23030.1 | Symbols: | ARM repeat superfamily protein | chr1:... 64 4e-10
AT5G58680.1 | Symbols: | ARM repeat superfamily protein | chr5:... 62 7e-10
AT3G01400.1 | Symbols: | ARM repeat superfamily protein | chr3:... 61 2e-09
AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16... 59 6e-09
AT3G54790.1 | Symbols: | ARM repeat superfamily protein | chr3:... 57 2e-08
AT3G54790.2 | Symbols: | ARM repeat superfamily protein | chr3:... 57 2e-08
AT5G67340.1 | Symbols: | ARM repeat superfamily protein | chr5:... 56 6e-08
AT3G54850.1 | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20... 52 9e-07
AT1G71020.2 | Symbols: | ARM repeat superfamily protein | chr1:... 51 2e-06
AT1G71020.1 | Symbols: | ARM repeat superfamily protein | chr1:... 50 3e-06
>AT2G22125.1 | Symbols: CSI1 | binding | chr2:9406793-9414223
FORWARD LENGTH=2150
Length = 2150
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/524 (72%), Positives = 428/524 (81%), Gaps = 2/524 (0%)
Query: 1 MIYDDKAESARASDPLVVEQSLLNQFKPHLPLVVQERTIEALASLYGNPILSLKLANSDA 60
MIYD KAE+ RASDPLVVEQ+LL QFKP LP +VQERTIEALASLYGN ILS+KL+NSDA
Sbjct: 393 MIYDGKAETTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNSILSVKLSNSDA 452
Query: 61 KRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSSEQQQEC 120
KRLLVGLITMA NEVQDEL+KALL LCN E +LW ALQGREG+QLLISLLGLSSEQQQEC
Sbjct: 453 KRLLVGLITMAVNEVQDELVKALLMLCNHEGSLWQALQGREGIQLLISLLGLSSEQQQEC 512
Query: 121 AVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRAC 180
AVALL LLS NDESKW+ITAAGGIPPLVQILE+GS KA+EDSATILRNLC+HSEDIRAC
Sbjct: 513 AVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAREDSATILRNLCNHSEDIRAC 572
Query: 181 VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVL 240
VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESK YVL
Sbjct: 573 VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKIYVL 632
Query: 241 DALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKEETQAKSASALAGIFEMRKDVRE 300
DAL+SMLSVV ND+LREGSA++DAI+TMIK++SS KEETQA SASALA IF+ RKD+RE
Sbjct: 633 DALKSMLSVVPFNDMLREGSASNDAIETMIKLMSSGKEETQANSASALAAIFQSRKDLRE 692
Query: 301 SSIAVKTLWSVMKLLTVESESILMESSRCLATIFLSIKENREVAAIXXXXXXXXXXXXXX 360
S++A+KTL S +KLL V+SE IL+ES RCLA I LSIKENR+VA
Sbjct: 693 SALALKTLLSAIKLLNVDSERILVESCRCLAAILLSIKENRDVAISAREALPTIVSLANS 752
Query: 361 XXXXXXELAICAVANLILDSXXXXXXXXXXXXLPATRVLREGTISGKTHAAAAIARLLHS 420
E +CA+ANLILDS L ATR+LREGT+SGKT AAAAIARLL
Sbjct: 753 SVLEVAEQGMCALANLILDSEVSEKVIVEDIILSATRILREGTVSGKTLAAAAIARLLSR 812
Query: 421 RKVDYAINECVNRAGTVLALVSFLDSAMNGPVVTSDALEALAILSRSEETSAHSKPAWAV 480
R++D A+ + VNRAGTVL LVS L+SA S+AL+ALAI SRS + + KPAWAV
Sbjct: 813 RRIDSALTDSVNRAGTVLTLVSLLESADGRSDAISEALDALAIFSRS-GANGNVKPAWAV 871
Query: 481 LAEFPKSISPIVLSIAD-STPVLQDKAIEILSRLCKDQPVELGD 523
LAE P S++PIV SI + P LQDKAIE+LSRLC+DQP+ LG+
Sbjct: 872 LAESPNSMAPIVSSIVSVANPSLQDKAIEVLSRLCRDQPIVLGN 915
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 111 GLSSEQQQE-CAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRN 169
G SS Q++E C LL L+ + + + + +P LV +L SGSV K +AT+L +
Sbjct: 73 GSSSAQEREYCLKQLLDLIEMRENAFSAVGSHSQAVPVLVSLLRSGSVGVKIQAATVLGS 132
Query: 170 LCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTL 209
LC +E +R V +P LL LLK+ S G+ AAKT+
Sbjct: 133 LCKENE-LRVKVLLGGCIPPLLGLLKSSSVEGQIAAAKTI 171
>AT1G77460.2 | Symbols: | Armadillo/beta-catenin-like repeat ; C2
calcium/lipid-binding domain (CaLB) protein |
chr1:29104378-29111580 FORWARD LENGTH=2136
Length = 2136
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 211/522 (40%), Positives = 312/522 (59%), Gaps = 8/522 (1%)
Query: 1 MIYDDKAESARASDPLVVEQSLLNQFKPHLPLVVQERTIEALASLYGNPILSLKLANSDA 60
MI+ S DP V+E L+ KP ++QER +EA+ASLYGN LS L +++A
Sbjct: 371 MIFKQPESSENIFDPSVIESILVKLLKPRDTKLIQERILEAMASLYGNSSLSCYLDDAEA 430
Query: 61 KRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSSEQQQEC 120
KR+L+ LITMA+ +V++ L+ L LC+ + +W A+ REG+QL IS LGLSSEQ QE
Sbjct: 431 KRVLIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISFLGLSSEQHQEY 490
Query: 121 AVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRAC 180
AV +L +L+ D+SKW++TAAGGIPPLVQ+LE+GS KAKED+A IL NLC HSE+IR C
Sbjct: 491 AVEMLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWNLCCHSEEIRDC 550
Query: 181 VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVL 240
VE A +PA LWLLK G PN +E +AKTL L+H +D ATI+QL ALL D P SK V+
Sbjct: 551 VERAGGIPAFLWLLKTGGPNSQETSAKTLVKLVHTADPATINQLLALLLGDDPTSKIQVI 610
Query: 241 DALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKEETQAKSASALAGIFEMRKDVRE 300
+ L +LS + DL+ G AA+ + ++++ L+S++EET+ +AS LA +F R+D+
Sbjct: 611 EVLGHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLADLFSSRQDICG 670
Query: 301 SSIAVKTLWSVMKLLTVESESILMESSRCLATIFLSI--KENREVAAIXXXXXXXXXXXX 358
+ +KLLT ++++ + +R L + + N++ + I
Sbjct: 671 HLATDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKNNNNKKKSYIAEGDIKSLIKLA 730
Query: 359 XXXXXXXXELAICAVANLILDSXXXXXXXXXXXXLPATRVLREGTISGKTHAAAAIARLL 418
E A+ A+ANL+ D TR+L +G+ GK +A+ A+ +LL
Sbjct: 731 KNSSIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGKRNASRALHQLL 790
Query: 419 HSRKVDYAINECVNRAGTVLALVSFLDSAMNGPVVTSDA---LEALAILSRSEETSAHSK 475
+ V + A A++S +DS + V ++DA LE +A+L++++ S
Sbjct: 791 KNFPVCDVLK---GSAQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKTKSGVNFSY 847
Query: 476 PAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQ 517
P W LAE P S+ +V +A+ ++QDKAIE+LSRLC DQ
Sbjct: 848 PPWIALAEVPSSLETLVQCLAEGHTLVQDKAIEVLSRLCSDQ 889
>AT1G77460.1 | Symbols: | Armadillo/beta-catenin-like repeat ; C2
calcium/lipid-binding domain (CaLB) protein |
chr1:29104378-29111580 FORWARD LENGTH=2136
Length = 2136
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 211/522 (40%), Positives = 312/522 (59%), Gaps = 8/522 (1%)
Query: 1 MIYDDKAESARASDPLVVEQSLLNQFKPHLPLVVQERTIEALASLYGNPILSLKLANSDA 60
MI+ S DP V+E L+ KP ++QER +EA+ASLYGN LS L +++A
Sbjct: 371 MIFKQPESSENIFDPSVIESILVKLLKPRDTKLIQERILEAMASLYGNSSLSCYLDDAEA 430
Query: 61 KRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSSEQQQEC 120
KR+L+ LITMA+ +V++ L+ L LC+ + +W A+ REG+QL IS LGLSSEQ QE
Sbjct: 431 KRVLIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISFLGLSSEQHQEY 490
Query: 121 AVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRAC 180
AV +L +L+ D+SKW++TAAGGIPPLVQ+LE+GS KAKED+A IL NLC HSE+IR C
Sbjct: 491 AVEMLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWNLCCHSEEIRDC 550
Query: 181 VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVL 240
VE A +PA LWLLK G PN +E +AKTL L+H +D ATI+QL ALL D P SK V+
Sbjct: 551 VERAGGIPAFLWLLKTGGPNSQETSAKTLVKLVHTADPATINQLLALLLGDDPTSKIQVI 610
Query: 241 DALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKEETQAKSASALAGIFEMRKDVRE 300
+ L +LS + DL+ G AA+ + ++++ L+S++EET+ +AS LA +F R+D+
Sbjct: 611 EVLGHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLADLFSSRQDICG 670
Query: 301 SSIAVKTLWSVMKLLTVESESILMESSRCLATIFLSI--KENREVAAIXXXXXXXXXXXX 358
+ +KLLT ++++ + +R L + + N++ + I
Sbjct: 671 HLATDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKNNNNKKKSYIAEGDIKSLIKLA 730
Query: 359 XXXXXXXXELAICAVANLILDSXXXXXXXXXXXXLPATRVLREGTISGKTHAAAAIARLL 418
E A+ A+ANL+ D TR+L +G+ GK +A+ A+ +LL
Sbjct: 731 KNSSIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGKRNASRALHQLL 790
Query: 419 HSRKVDYAINECVNRAGTVLALVSFLDSAMNGPVVTSDA---LEALAILSRSEETSAHSK 475
+ V + A A++S +DS + V ++DA LE +A+L++++ S
Sbjct: 791 KNFPVCDVLK---GSAQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKTKSGVNFSY 847
Query: 476 PAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQ 517
P W LAE P S+ +V +A+ ++QDKAIE+LSRLC DQ
Sbjct: 848 PPWIALAEVPSSLETLVQCLAEGHTLVQDKAIEVLSRLCSDQ 889
>AT1G44120.1 | Symbols: | Armadillo/beta-catenin-like repeat ; C2
calcium/lipid-binding domain (CaLB) protein |
chr1:16780610-16787414 FORWARD LENGTH=2114
Length = 2114
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 183/522 (35%), Positives = 292/522 (55%), Gaps = 9/522 (1%)
Query: 7 AESARASDPLVVEQSLLNQFKPHLPLVVQERTIEALASLYGNPILSLKLANSDAKRLLVG 66
++ A DP + E L+ KP ++ ER +EA+ SL+GN LS L N DAKR+LV
Sbjct: 354 GDTREAFDPTLTEGILVKLLKPRDTQLIHERILEAMESLFGNVDLSKLLNNVDAKRVLVC 413
Query: 67 LITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSSEQQQECAVALLF 126
L +A + ++ ++ L LC ++W A+ REG+Q+LI LGLSSEQ QE +V L
Sbjct: 414 LTILATDGPRERMITCLSNLCK-HGDVWDAIGKREGIQILIPYLGLSSEQHQELSVEFLA 472
Query: 127 LLSIANDESKWSITAAGGIPPLVQILESG-SVKAKEDSATILRNLCDHSEDIRACVESAD 185
+L+ +ES+W++T+AGGIPPL+QILE+G S KAK+D+ ++ NLC HSE+IR CVE A
Sbjct: 473 ILTDNVEESRWAVTSAGGIPPLLQILETGVSQKAKDDAVRVILNLCCHSEEIRLCVEKAG 532
Query: 186 AVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVLDALRS 245
A+PALL LLKNG P +E +A TL LI +D + I Q+ AL D P+SK +++ L
Sbjct: 533 AIPALLGLLKNGGPKSQESSANTLLKLIKTADPSVIEQVQALFLGDAPKSKTHLIRVLGH 592
Query: 246 MLSVVALNDLLREGSAASDAIDTMIKILSSTKEETQAKSASALAGIFEMRKDVRESSIAV 305
+L+ +L + + +GSAA++ + ++++ L+S+ E+ + +AS LA +F RKD+
Sbjct: 593 VLASASLEEFVTKGSAANNGLRSLVQRLASSNEKMKENAASVLADLFSSRKDLCGGLGFD 652
Query: 306 KTLWSVMKLLTVESESILMESSRCLATI---FLSIKENREVAAIXXXXXXXXXXXXXXXX 362
+ KLL+ + ++ + + L ++ ++++
Sbjct: 653 EDDNPCTKLLSGNTHAVATQLAHALGSLSNPTKKKTATKKLSGPEVEVIKPLIKSAKTNP 712
Query: 363 XXXXELAICAVANLILDSXXXXXXXXXXXXLPATRVLREGTISGKTHAAAAIARLLHSRK 422
E + +ANL+ D TRVLREGT+ GK +A+ A+ +LL +
Sbjct: 713 IESTENPMSTLANLLSDPNVAAEALNDDVVSALTRVLREGTLQGKRNASHALHQLLKHFQ 772
Query: 423 VD--YAINECVNRAGTVLALVSFLDSAMNGPVVTSDALEALAILSRSEETSAHSKPAWAV 480
V + NE A V L+ L++ D LE L++L++++ + S ++
Sbjct: 773 VSDVFKGNEQCRFA--VSELIDLLNATDLNNSAFIDVLEVLSLLAKAKYGANLSHNPFSA 830
Query: 481 LAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPVELG 522
E P ++ +V +A+ P++QDKAIEILSR CK Q + LG
Sbjct: 831 FGEVPSNLDSLVRGLAEGHPLVQDKAIEILSRFCKTQFILLG 872
>AT3G46510.1 | Symbols: PUB13, ATPUB13 | plant U-box 13 |
chr3:17124106-17126539 REVERSE LENGTH=660
Length = 660
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 44/199 (22%)
Query: 55 LANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSS 114
+A + A LLVGL++ + +Q+ + ALL L E N A+ + ++ +L S
Sbjct: 390 IAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENN-KGAIVSAGAIPGIVQVLKKGS 448
Query: 115 EQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLC--- 171
+ +E A A LF LS+ DE+K +I A G IPPLV +L G+ + K+D+AT L NLC
Sbjct: 449 MEARENAAATLFSLSVI-DENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQ 507
Query: 172 --------------------------------------DHSEDIRACVESADAVPALLWL 193
H E +A + S+DAVP+L+
Sbjct: 508 GNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEF 566
Query: 194 LKNGSPNGKEIAAKTLNHL 212
++ GSP +E AA L HL
Sbjct: 567 IRTGSPRNRENAAAVLVHL 585
>AT2G23140.1 | Symbols: | RING/U-box superfamily protein with ARM
repeat domain | chr2:9845696-9849105 REVERSE LENGTH=829
Length = 829
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 105 LLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSA 164
LL+ LL + QE AV L LSI ND +K +I AG I PL+ +LE+GS +AKE+SA
Sbjct: 590 LLVELLYSTDSATQENAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSA 648
Query: 165 TILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL-IHKSDTATISQ 223
L +L E+ + + + A+ L+ LL NG+P GK+ AA L +L IH+ + A I Q
Sbjct: 649 ATLFSLSVIEEN-KIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQ 707
Query: 224 LTAL 227
A+
Sbjct: 708 SGAV 711
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 55 LANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSS 114
+ NS A LLV L+ + Q+ + ALL L + N A+ ++ LI +L S
Sbjct: 582 IGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNN-KKAIADAGAIEPLIHVLENGS 640
Query: 115 EQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHS 174
+ +E + A LF LS+ +E+K I +G I PLV +L +G+ + K+D+AT L NL H
Sbjct: 641 SEAKENSAATLFSLSVI-EENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQ 699
Query: 175 EDIRACVESADAVPALLWLL 194
E+ +A + + AV L+ L+
Sbjct: 700 EN-KAMIVQSGAVRYLIDLM 718
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 53 LKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGL 112
+K+ S A LV L+ + + AL L + N +Q V+ LI L+
Sbjct: 662 IKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQS-GAVRYLIDLMDP 720
Query: 113 SSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCD 172
++ + L L +I E + +I GGIP LV+++E GS + KE++A L L
Sbjct: 721 AAGMVDKAVAVLANLATIP--EGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLST 778
Query: 173 HSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHK 215
+S V AVP L+ L ++G+P +E A L++ ++
Sbjct: 779 NSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 821
>AT2G23140.2 | Symbols: | RING/U-box superfamily protein with ARM
repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826
Length = 826
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 105 LLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSA 164
LL+ LL + QE AV L LSI ND +K +I AG I PL+ +LE+GS +AKE+SA
Sbjct: 587 LLVELLYSTDSATQENAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSA 645
Query: 165 TILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL-IHKSDTATISQ 223
L +L E+ + + + A+ L+ LL NG+P GK+ AA L +L IH+ + A I Q
Sbjct: 646 ATLFSLSVIEEN-KIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQ 704
Query: 224 LTAL 227
A+
Sbjct: 705 SGAV 708
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 55 LANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSS 114
+ NS A LLV L+ + Q+ + ALL L + N A+ ++ LI +L S
Sbjct: 579 IGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNN-KKAIADAGAIEPLIHVLENGS 637
Query: 115 EQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHS 174
+ +E + A LF LS+ +E+K I +G I PLV +L +G+ + K+D+AT L NL H
Sbjct: 638 SEAKENSAATLFSLSVI-EENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQ 696
Query: 175 EDIRACVESADAVPALLWLL 194
E+ +A + + AV L+ L+
Sbjct: 697 EN-KAMIVQSGAVRYLIDLM 715
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 53 LKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGL 112
+K+ S A LV L+ + + AL L + N +Q V+ LI L+
Sbjct: 659 IKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQS-GAVRYLIDLMDP 717
Query: 113 SSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCD 172
++ + L L +I E + +I GGIP LV+++E GS + KE++A L L
Sbjct: 718 AAGMVDKAVAVLANLATIP--EGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLST 775
Query: 173 HSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHK 215
+S V AVP L+ L ++G+P +E A L++ ++
Sbjct: 776 NSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 818
>AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 |
chr2:12367001-12370608 REVERSE LENGTH=962
Length = 962
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 103 VQLLISLLGLSSEQQ-QECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKE 161
+ LL++LL +S++ + QE AV + LSI + + ++G +P +V +L+ GS++A+E
Sbjct: 399 IPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARE 458
Query: 162 DSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL-IHKSD--T 218
++A L +L E+ + + +A A+P L+ LL GS GK+ AA L +L I + +
Sbjct: 459 NAAATLFSLSVIDEN-KVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGK 517
Query: 219 ATISQLTALLTSDLPESKAYVLDALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKE 278
A + L +L L E ++ ++D S+L++++ + + A+DA+ ++ + S
Sbjct: 518 AVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSP 577
Query: 279 ETQAKSASAL 288
+ SA+ L
Sbjct: 578 RNKENSAAVL 587
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 64 LVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREG-VQLLISLLGLSSEQQQECAV 122
LV L++ + + + AL LC + N A+ R G V +L+ LL + ++
Sbjct: 486 LVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAV--RAGLVPVLMRLLTEPESGMVDESL 543
Query: 123 ALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRACVE 182
++L +LS ++ + K + AA +P LV + SGS + KE+SA +L +LC ++ +
Sbjct: 544 SILAILS-SHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQ 602
Query: 183 SADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSD 217
+ L+ + +NG+ GK AA+ LN +D
Sbjct: 603 KLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFND 637
>AT1G23030.1 | Symbols: | ARM repeat superfamily protein |
chr1:8156745-8158842 FORWARD LENGTH=612
Length = 612
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 115/217 (52%), Gaps = 9/217 (4%)
Query: 103 VQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKED 162
+ +L++LL QE A+ + LSI + +K I AG + +VQ+L +G+++A+E+
Sbjct: 375 IPVLVNLLTSEDVATQENAITCVLNLSIY-ENNKELIMFAGAVTSIVQVLRAGTMEAREN 433
Query: 163 SATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLI----HKSDT 218
+A L +L E+ + + + A+PAL+ LL+NG+P GK+ AA L +L +K
Sbjct: 434 AAATLFSLSLADEN-KIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRA 492
Query: 219 ATISQLTALLTSDLPESKAYVLDALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKE 278
+TAL+ ++ ++D ++LSV+A N + ++ + +I IL + +
Sbjct: 493 VRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQT 552
Query: 279 ETQAKSASALAGIFEMRKDVRESSIAVKTLWSVMKLL 315
+ +A+ L + ++D E I + L +V+ L+
Sbjct: 553 RNRENAAAILLSL--CKRDT-EKLITIGRLGAVVPLM 586
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 55 LANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSS 114
+A + A +LV L+T Q+ + +L L E N + V ++ +L +
Sbjct: 369 IAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNK-ELIMFAGAVTSIVQVLRAGT 427
Query: 115 EQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLC-DH 173
+ +E A A LF LS+A DE+K I +G IP LV +LE+G+ + K+D+AT L NLC H
Sbjct: 428 MEARENAAATLFSLSLA-DENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYH 486
Query: 174 SEDIRACVESADAVPALLWLLKNGS 198
RA A V AL+ +L + +
Sbjct: 487 GNKGRAV--RAGIVTALVKMLSDST 509
>AT5G58680.1 | Symbols: | ARM repeat superfamily protein |
chr5:23708247-23709320 REVERSE LENGTH=357
Length = 357
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 53 LKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGL 112
+ + S A LLV L+ + + AL +LC+ N A++ L+ ++
Sbjct: 179 ITIGRSGAIPLLVNLLENGGFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVELMIDF 238
Query: 113 SSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCD 172
S+ + A + L+S ESK ++ GG+P LV+I+E+G+ + KE S +IL LC+
Sbjct: 239 ESDMVDKSAFVMNLLMSAP--ESKPAVVEEGGVPVLVEIVEAGTQRQKEISVSILLQLCE 296
Query: 173 HSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHK 215
S R V AVP L+ L + + G ++ A+ L L+ +
Sbjct: 297 ESVVYRTMVAREGAVPPLVALSQGSASRGAKVKAEALIELLRQ 339
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 49 PILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLIS 108
P +KLA + A + LV LI+ + ++Q+ + A+L L + N + V+ L++
Sbjct: 93 PENRIKLAKAGAIKPLVSLISSSDLQLQEYGVTAVLNLSLCDEN-KEMIVSSGAVKPLVN 151
Query: 109 LLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILR 168
L L + +E A L LS +E+K +I +G IP LV +LE+G +AK+D++T L
Sbjct: 152 ALRLGTPTTKENAACALLRLSQV-EENKITIGRSGAIPLLVNLLENGGFRAKKDASTALY 210
Query: 169 NLCDHSEDIRACVESADAVP 188
+LC +E+ VES P
Sbjct: 211 SLCSTNENKTRAVESGIMKP 230
>AT3G01400.1 | Symbols: | ARM repeat superfamily protein |
chr3:151920-152987 FORWARD LENGTH=355
Length = 355
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 55 LANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGV-QLLISLLG-L 112
+ S A LLV L+ + + AL +LC+ + N A+Q G+ + L+ L+
Sbjct: 183 IGRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQS--GIMKPLVELMADF 240
Query: 113 SSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCD 172
S + A + L+S+ ESK +I GG+P LV+I+E G+ + KE + +IL LC+
Sbjct: 241 GSNMVDKSAFVMSLLMSVP--ESKPAIVEEGGVPVLVEIVEVGTQRQKEMAVSILLQLCE 298
Query: 173 HSEDIRACVESADAVPALLWLLKNGSPNGKEIA 205
S R V A+P L+ L + G+ K+ A
Sbjct: 299 ESVVYRTMVAREGAIPPLVALSQAGTSRAKQKA 331
>AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 |
chr5:16928086-16930367 REVERSE LENGTH=660
Length = 660
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 5/138 (3%)
Query: 35 QERTIEALASL-YGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNL 93
Q R+++ + L NP + +AN+ A LLV L++ + +Q+ + LL L E N
Sbjct: 396 QRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVN- 454
Query: 94 WHALQGREG-VQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQIL 152
L EG + +I +L + + +E + A LF LS+ DE+K +I + GIPPLV +L
Sbjct: 455 -KKLISNEGAIPNIIEILENGNREARENSAAALFSLSML-DENKVTIGLSNGIPPLVDLL 512
Query: 153 ESGSVKAKEDSATILRNL 170
+ G+++ K+D+ T L NL
Sbjct: 513 QHGTLRGKKDALTALFNL 530
>AT3G54790.1 | Symbols: | ARM repeat superfamily protein |
chr3:20281830-20284363 REVERSE LENGTH=760
Length = 760
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 121 AVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRAC 180
AVALL LS A E + +I GGIP LV+ ++ GS + KE++A++L LC +S
Sbjct: 657 AVALLANLS-AVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 181 VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSD 217
V A+P L+ L ++G+ KE A + L+H ++ D
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRD 752
>AT3G54790.2 | Symbols: | ARM repeat superfamily protein |
chr3:20281830-20284255 REVERSE LENGTH=724
Length = 724
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 121 AVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRAC 180
AVALL LS A E + +I GGIP LV+ ++ GS + KE++A++L LC +S
Sbjct: 621 AVALLANLS-AVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 679
Query: 181 VESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSD 217
V A+P L+ L ++G+ KE A + L+H ++ D
Sbjct: 680 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRD 716
>AT5G67340.1 | Symbols: | ARM repeat superfamily protein |
chr5:26864996-26867450 FORWARD LENGTH=707
Length = 707
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 103 VQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKED 162
V+ L+ L+ + ++ V L L ++ E K +I GGIP LV+++E GS + KE+
Sbjct: 589 VRYLVELMDPAFGMVEKAVVVLANLATVR--EGKIAIGEEGGIPVLVEVVELGSARGKEN 646
Query: 163 SATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL 212
+ L LC HS V +P L+ L K+G+ GKE A L +
Sbjct: 647 ATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYF 696
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 101 EGVQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSV-KA 159
E + L+SLL + E+ Q AV L LSI ND +K I +G I PL+ +L++G + +A
Sbjct: 463 EAIPSLVSLLYSTDERIQADAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLKTGYLEEA 521
Query: 160 KEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL-IHKSDT 218
K +SA L +L E+ + + A A+ L+ LL +GS +GK+ AA L +L IH +
Sbjct: 522 KANSAATLFSL-SVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENK 580
Query: 219 ATI 221
+
Sbjct: 581 TKV 583
>AT3G54850.1 | Symbols: ATPUB14, PUB14 | plant U-box 14 |
chr3:20321524-20323848 FORWARD LENGTH=632
Length = 632
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 107/189 (56%), Gaps = 5/189 (2%)
Query: 103 VQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKED 162
+ LL+ LL + QE +V L LSI N+ +K +I AG I +V++L++GS++A+E+
Sbjct: 389 IPLLVELLSSPDPRTQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLKNGSMEAREN 447
Query: 163 SATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL-IHKSDT--A 219
+A L +L E+ + + +A A+ AL+ LL+ G+ GK+ AA + +L I++ + A
Sbjct: 448 AAATLFSLSVIDEN-KVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRA 506
Query: 220 TISQLTALLTSDLPESKAYVLDALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKEE 279
+ LT L ++ ++D ++L++++ N + A +++I +++I+ +
Sbjct: 507 VKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPR 566
Query: 280 TQAKSASAL 288
+ +A+ L
Sbjct: 567 NRENAAAIL 575
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 106 LISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSAT 165
L+ L + +QQ A L LL+ N +++ I AG IP LV++L S + +E S T
Sbjct: 350 LLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVT 409
Query: 166 ILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHL 212
L NL +E + + A A+ ++ +LKNGS +E AA TL L
Sbjct: 410 ALLNLS-INEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSL 455
>AT1G71020.2 | Symbols: | ARM repeat superfamily protein |
chr1:26790825-26792357 REVERSE LENGTH=480
Length = 480
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 103 VQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKED 162
V ++ +L S + +E A A LF LS+A DE+K I A+G I LV +L+ GSV+ K+D
Sbjct: 279 VTSIVLVLRAGSMEARENAAATLFSLSLA-DENKIIIGASGAIMALVDLLQYGSVRGKKD 337
Query: 163 SATILRNLC 171
+AT L NLC
Sbjct: 338 AATALFNLC 346
>AT1G71020.1 | Symbols: | ARM repeat superfamily protein |
chr1:26790825-26793105 REVERSE LENGTH=628
Length = 628
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 103 VQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKED 162
V ++ +L S + +E A A LF LS+A DE+K I A+G I LV +L+ GSV+ K+D
Sbjct: 427 VTSIVLVLRAGSMEARENAAATLFSLSLA-DENKIIIGASGAIMALVDLLQYGSVRGKKD 485
Query: 163 SATILRNLC 171
+AT L NLC
Sbjct: 486 AATALFNLC 494