Miyakogusa Predicted Gene

Lj0g3v0070689.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0070689.2 tr|A8CF51|A8CF51_BRACM AP2/EREBP transcription
factor OS=Brassica campestris GN=BcAP2 PE=2 SV=1,32.65,5e-19,seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.3433.2
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10510.2 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991...    56   3e-08
AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991...    55   3e-08
AT5G10510.1 | Symbols: AIL6, PLT3 | AINTEGUMENTA-like 6 | chr5:3...    50   1e-06
AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superfa...    50   1e-06
AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superfa...    50   1e-06

>AT5G10510.2 | Symbols: AIL6 | AINTEGUMENTA-like 6 |
           chr5:3315991-3320008 FORWARD LENGTH=581
          Length = 581

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 78/179 (43%), Gaps = 24/179 (13%)

Query: 1   MAGATNWLTFSLTPMEIMLRSSSTDSQFLQYDTASSSHC---FLDNFYANVLTNPK---S 54
           MA  TNWLTFSL+PME MLRSS   SQF+ YD +S++      LDNFY      P+    
Sbjct: 2   MAPMTNWLTFSLSPME-MLRSSD-QSQFVSYDASSAASSSPYLLDNFYGWSNQKPQEFFK 59

Query: 55  EMLNQNEMQRVTEGSILTSLMDDSSPPQIENQPPMAVVSKLEDFFESHQGEVM----QXX 110
           E         + + +ILT+ +D  S    +N  P     KLEDF       V        
Sbjct: 60  EEAQLAAAASMADSTILTTFVDPQS-HHSQNHIP-----KLEDFLGDSSSIVRYSDNSQT 113

Query: 111 XXXXXXXXQIYE--HVPPPPGFFNGEQDLKAAVDVAAEFR----AKLDDSVEIPKNDVV 163
                   QIY+  H     GF++   D K      + F     +++DDS  I +  + 
Sbjct: 114 DTQDSSLTQIYDPRHHHNQTGFYSDHHDFKTMAGFQSAFSTNSGSEVDDSASIGRTHLA 172



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%)

Query: 213 TFGQRTSIYRGVTRHRWTGR 232
           TFGQRTSIYRGVTRHRWTGR
Sbjct: 261 TFGQRTSIYRGVTRHRWTGR 280


>AT5G10510.3 | Symbols: AIL6 | AINTEGUMENTA-like 6 |
           chr5:3315991-3320008 FORWARD LENGTH=604
          Length = 604

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 78/179 (43%), Gaps = 24/179 (13%)

Query: 1   MAGATNWLTFSLTPMEIMLRSSSTDSQFLQYDTASSSHC---FLDNFYANVLTNPK---S 54
           MA  TNWLTFSL+PME MLRSS   SQF+ YD +S++      LDNFY      P+    
Sbjct: 2   MAPMTNWLTFSLSPME-MLRSSD-QSQFVSYDASSAASSSPYLLDNFYGWSNQKPQEFFK 59

Query: 55  EMLNQNEMQRVTEGSILTSLMDDSSPPQIENQPPMAVVSKLEDFFESHQGEVMQXXXXXX 114
           E         + + +ILT+ +D  S    +N  P     KLEDF       V        
Sbjct: 60  EEAQLAAAASMADSTILTTFVDPQS-HHSQNHIP-----KLEDFLGDSSSIVRYSDNSQT 113

Query: 115 ----XXXXQIYE--HVPPPPGFFNGEQDLKAAVDVAAEFR----AKLDDSVEIPKNDVV 163
                   QIY+  H     GF++   D K      + F     +++DDS  I +  + 
Sbjct: 114 DTQDSSLTQIYDPRHHHNQTGFYSDHHDFKTMAGFQSAFSTNSGSEVDDSASIGRTHLA 172



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%)

Query: 213 TFGQRTSIYRGVTRHRWTGR 232
           TFGQRTSIYRGVTRHRWTGR
Sbjct: 261 TFGQRTSIYRGVTRHRWTGR 280


>AT5G10510.1 | Symbols: AIL6, PLT3 | AINTEGUMENTA-like 6 |
           chr5:3316036-3320008 FORWARD LENGTH=569
          Length = 569

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%)

Query: 213 TFGQRTSIYRGVTRHRWTGR 232
           TFGQRTSIYRGVTRHRWTGR
Sbjct: 246 TFGQRTSIYRGVTRHRWTGR 265


>AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding
           superfamily protein | chr3:7300764-7303370 FORWARD
           LENGTH=574
          Length = 574

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%)

Query: 213 TFGQRTSIYRGVTRHRWTGR 232
           TFGQRTSIYRGVTRHRWTGR
Sbjct: 174 TFGQRTSIYRGVTRHRWTGR 193


>AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding
           superfamily protein | chr1:18977517-18980305 FORWARD
           LENGTH=568
          Length = 568

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%)

Query: 213 TFGQRTSIYRGVTRHRWTGR 232
           TFGQRTSIYRGVTRHRWTGR
Sbjct: 183 TFGQRTSIYRGVTRHRWTGR 202