Miyakogusa Predicted Gene

Lj0g3v0070429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0070429.1 tr|I3SMT5|I3SMT5_LOTJA Superoxide dismutase
[Cu-Zn] OS=Lotus japonicus PE=2 SV=1,99.38,0,Cu,Zn superoxide
dismutase-like,Superoxide dismutase, copper/zinc binding domain;
SOD_CU_ZN_1,Supero,CUFF.3525.1
         (160 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase 3...   243   4e-65
AT1G08830.2 | Symbols: CSD1 | copper/zinc superoxide dismutase 1...   208   1e-54
AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase 1...   208   1e-54
AT5G18100.2 | Symbols: CSD3 | copper/zinc superoxide dismutase 3...   199   5e-52
AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide dis...   185   1e-47
AT1G12520.2 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...    62   2e-10
AT1G12520.3 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...    62   2e-10
AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...    62   2e-10

>AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase 3 |
           chr5:5987221-5988706 FORWARD LENGTH=164
          Length = 164

 Score =  243 bits (620), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 138/160 (86%)

Query: 1   MESTKGTVKGVALINGDNSIRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTN 60
           ME+ +G ++ VALI GDN++RG +QFVQ  SG THVTG+I+GL+PG HGFHIH+ GDTTN
Sbjct: 1   MEAPRGNLRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTN 60

Query: 61  GCNSTGPHFNPLKKNHGAPSDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGR 120
           GC STGPHFNPL + HG P++EERHAGDLGNI  G +GVAEI I D HIPLSG +SILGR
Sbjct: 61  GCISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGR 120

Query: 121 AVVVHADPDDLGRGGHELSKTTGNAGARVGCGIIGLQSSV 160
           AVVVHADPDDLG+GGH+LSK+TGNAG+RVGCGIIGLQSS 
Sbjct: 121 AVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQSSA 160


>AT1G08830.2 | Symbols: CSD1 | copper/zinc superoxide dismutase 1 |
           chr1:2827700-2829053 FORWARD LENGTH=152
          Length = 152

 Score =  208 bits (530), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 117/149 (78%)

Query: 9   KGVALINGDNSIRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTNGCNSTGPH 68
           KGVA++N    + G+I F Q   G+T V+G ++GL PGLHGFH+HALGDTTNGC STGPH
Sbjct: 3   KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62

Query: 69  FNPLKKNHGAPSDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGRAVVVHADP 128
           FNP  K HGAP D  RHAGDLGNI VG DG A  +I+D  IPL+G +SI+GRAVVVHADP
Sbjct: 63  FNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADP 122

Query: 129 DDLGRGGHELSKTTGNAGARVGCGIIGLQ 157
           DDLG+GGHELS  TGNAG RV CGIIGLQ
Sbjct: 123 DDLGKGGHELSLATGNAGGRVACGIIGLQ 151


>AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase 1 |
           chr1:2827700-2829053 FORWARD LENGTH=152
          Length = 152

 Score =  208 bits (530), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 117/149 (78%)

Query: 9   KGVALINGDNSIRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTNGCNSTGPH 68
           KGVA++N    + G+I F Q   G+T V+G ++GL PGLHGFH+HALGDTTNGC STGPH
Sbjct: 3   KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62

Query: 69  FNPLKKNHGAPSDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGRAVVVHADP 128
           FNP  K HGAP D  RHAGDLGNI VG DG A  +I+D  IPL+G +SI+GRAVVVHADP
Sbjct: 63  FNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADP 122

Query: 129 DDLGRGGHELSKTTGNAGARVGCGIIGLQ 157
           DDLG+GGHELS  TGNAG RV CGIIGLQ
Sbjct: 123 DDLGKGGHELSLATGNAGGRVACGIIGLQ 151


>AT5G18100.2 | Symbols: CSD3 | copper/zinc superoxide dismutase 3 |
           chr5:5987221-5988436 FORWARD LENGTH=137
          Length = 137

 Score =  199 bits (507), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 113/134 (84%)

Query: 1   MESTKGTVKGVALINGDNSIRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTN 60
           ME+ +G ++ VALI GDN++RG +QFVQ  SG THVTG+I+GL+PG HGFHIH+ GDTTN
Sbjct: 1   MEAPRGNLRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTN 60

Query: 61  GCNSTGPHFNPLKKNHGAPSDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGR 120
           GC STGPHFNPL + HG P++EERHAGDLGNI  G +GVAEI I D HIPLSG +SILGR
Sbjct: 61  GCISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGR 120

Query: 121 AVVVHADPDDLGRG 134
           AVVVHADPDDLG+G
Sbjct: 121 AVVVHADPDDLGKG 134


>AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide
           dismutase 2 | chr2:12014548-12016303 FORWARD LENGTH=216
          Length = 216

 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 107/148 (72%)

Query: 9   KGVALINGDNSIRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTNGCNSTGPH 68
           K VA++ G + + G +   Q  SG T V  RITGLTPG HGFH+H  GDTTNGC STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 69  FNPLKKNHGAPSDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGRAVVVHADP 128
           FNP    HGAP DE RHAGDLGNI    DGVAE +I D  IPL+G +S++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 129 DDLGRGGHELSKTTGNAGARVGCGIIGL 156
           DDLG+GGHELS TTGNAG R+ CG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213


>AT1G12520.2 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268438 REVERSE LENGTH=229
          Length = 229

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 20  IRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAP 79
           I G ++F Q    +  +    TGL+PG H + I+  GD TNG  STG  +NP +   G  
Sbjct: 82  IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT- 140

Query: 80  SDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGRAVVVHADPDD 130
                  GDLG +    +G A  S     +    V  ++GRAVVV+   D+
Sbjct: 141 ----EPLGDLGTLEADKNGEAFYSGKKEKLK---VADLIGRAVVVYKTDDN 184


>AT1G12520.3 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268206 REVERSE LENGTH=184
          Length = 184

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 20  IRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAP 79
           I G ++F Q    +  +    TGL+PG H + I+  GD TNG  STG  +NP +   G  
Sbjct: 37  IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT- 95

Query: 80  SDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGRAVVVHADPDD 130
                  GDLG +    +G A  S     +    V  ++GRAVVV+   D+
Sbjct: 96  ----EPLGDLGTLEADKNGEAFYSGKKEKLK---VADLIGRAVVVYKTDDN 139


>AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268900 REVERSE LENGTH=320
          Length = 320

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 20  IRGSIQFVQHPSGITHVTGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAP 79
           I G ++F Q    +  +    TGL+PG H + I+  GD TNG  STG  +NP +   G  
Sbjct: 173 IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT- 231

Query: 80  SDEERHAGDLGNIAVGHDGVAEISISDVHIPLSGVHSILGRAVVVHADPDD 130
                  GDLG +    +G A  S     +    V  ++GRAVVV+   D+
Sbjct: 232 ----EPLGDLGTLEADKNGEAFYSGKKEKLK---VADLIGRAVVVYKTDDN 275