Miyakogusa Predicted Gene
- Lj0g3v0069809.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0069809.1 tr|B9H4K8|B9H4K8_POPTR DNA topoisomerase
OS=Populus trichocarpa GN=POPTRDRAFT_861019 PE=3
SV=1,79.24,0,PRTPISMRASEI,DNA topoisomerase, type IA;
TOPOISOMERASE_I_PROK,DNA topoisomerase, type IA, active
sit,CUFF.3360.1
(452 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63920.1 | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha... 655 0.0
AT2G32000.1 | Symbols: | DNA topoisomerase, type IA, core | chr... 158 8e-39
AT2G32000.2 | Symbols: | DNA topoisomerase, type IA, core | chr... 158 8e-39
>AT5G63920.1 | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha |
chr5:25574533-25581230 FORWARD LENGTH=926
Length = 926
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/416 (73%), Positives = 344/416 (82%), Gaps = 2/416 (0%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWRNP 71
+KVAEELYQ GFISYPRTETDSFS RT+L A+V+EQ HP WG YAQRLL+PE GLWRNP
Sbjct: 328 MKVAEELYQAGFISYPRTETDSFSSRTDLRAMVEEQTRHPAWGSYAQRLLEPEGGLWRNP 387
Query: 72 RGGGHDDKAHPPIHPTKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEIDIA 131
GGHDDKAHPPIHPTKFS+GES WS++H +YELVVRH+LACVS+PAV AETTVEIDIA
Sbjct: 388 ANGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELVVRHYLACVSQPAVAAETTVEIDIA 447
Query: 132 GELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPLLSEA 191
GE FSA GR IL KNYL+VY FE+WGGS+IP Y GQQF PT LTLD+ VTRPPPLL EA
Sbjct: 448 GERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKGQQFIPTTLTLDAAVTRPPPLLCEA 507
Query: 192 DLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEMAYKL 251
DLLSCMDK GIGTDATMHDHIKKLLDR YATKDA+TRF+PTNLGEALVMGYDD M Y+L
Sbjct: 508 DLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRFSPTNLGEALVMGYDD--MGYEL 565
Query: 252 WKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFFQRSN 311
WKP LR+ ME DM VS G K K VL T L +MKACFL AR+ K KLLEAM+IFF+RSN
Sbjct: 566 WKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAMTIFFERSN 625
Query: 312 RSAGDELHATGEVVRRCGLCQESDMVLKKNRDGNFMVGCLGFPQCRNAVWLPGSVSEAAV 371
+ E GEVVRRC LC ESDM L+KNRDGNFMVGC+ +PQCRNAVWLPG EA+V
Sbjct: 626 NTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMVGCMNYPQCRNAVWLPGPTLEASV 685
Query: 372 TTNPCNFCTPGPVYRIQLKFRQLEIPPNYNINHLGCIGGCDEILRQLTEICGTGPR 427
TTN C C PGPVY+I KFRQ+ IPP +++NHLGC+GGCD+IL+QL +ICGTG R
Sbjct: 686 TTNVCQSCGPGPVYKILFKFRQIGIPPGFDVNHLGCVGGCDDILKQLIDICGTGSR 741
>AT2G32000.1 | Symbols: | DNA topoisomerase, type IA, core |
chr2:13615999-13621563 REVERSE LENGTH=865
Length = 865
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 159/324 (49%), Gaps = 23/324 (7%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWRNP 71
+ +AE LY GFISYPRTE+ ++ + ++ Q +P WG Y QRLL + + P
Sbjct: 317 MHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLL---SDGFHMP 373
Query: 72 RGGGHDDKAHPPIHP----TKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVE 127
+ G D HPPI P T+ G W +LY+ V +HFL VS T VE
Sbjct: 374 KSGT-DAGDHPPITPMRAATEVMVGGDAW-----RLYQYVCQHFLGTVSPNCKYIRTKVE 427
Query: 128 IDIAGELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPL 187
+ I GE F G+ + EK + + P+ +P++ G++ + L G T PP
Sbjct: 428 LSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAPPDY 487
Query: 188 LSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEM 247
L+E++L+S M+K GIGTDA++ HI + +R Y + + PT LG L+ GY I+
Sbjct: 488 LTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTALGITLIRGYQCIDP 547
Query: 248 AYKLWKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFF 307
L P++RS +E + V++G V+ + + + F + V+ +E M F
Sbjct: 548 --DLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKFSYF----VQQIEHMDALF 601
Query: 308 QRSNRSAGDELHATGEVVRRCGLC 331
+ D +G + +CG C
Sbjct: 602 EAQFSPLAD----SGRALSKCGKC 621
>AT2G32000.2 | Symbols: | DNA topoisomerase, type IA, core |
chr2:13615999-13621397 REVERSE LENGTH=838
Length = 838
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 159/324 (49%), Gaps = 23/324 (7%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWRNP 71
+ +AE LY GFISYPRTE+ ++ + ++ Q +P WG Y QRLL + + P
Sbjct: 290 MHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLL---SDGFHMP 346
Query: 72 RGGGHDDKAHPPIHP----TKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVE 127
+ G D HPPI P T+ G W +LY+ V +HFL VS T VE
Sbjct: 347 KSGT-DAGDHPPITPMRAATEVMVGGDAW-----RLYQYVCQHFLGTVSPNCKYIRTKVE 400
Query: 128 IDIAGELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPL 187
+ I GE F G+ + EK + + P+ +P++ G++ + L G T PP
Sbjct: 401 LSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAPPDY 460
Query: 188 LSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEM 247
L+E++L+S M+K GIGTDA++ HI + +R Y + + PT LG L+ GY I+
Sbjct: 461 LTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTALGITLIRGYQCIDP 520
Query: 248 AYKLWKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFF 307
L P++RS +E + V++G V+ + + + F + V+ +E M F
Sbjct: 521 --DLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKFSYF----VQQIEHMDALF 574
Query: 308 QRSNRSAGDELHATGEVVRRCGLC 331
+ D +G + +CG C
Sbjct: 575 EAQFSPLAD----SGRALSKCGKC 594