Miyakogusa Predicted Gene

Lj0g3v0069769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0069769.1 tr|A9RVH9|A9RVH9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,45.45,0.0000000000003,DAP3,Ribosomal protein S23/S29,
mitochondrial; seg,NULL; SUBFAMILY NOT NAMED,NULL; MITOCHONDRIAL
28S,CUFF.3365.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16870.1 | Symbols:  | mitochondrial 28S ribosomal protein S2...   192   1e-49

>AT1G16870.1 | Symbols:  | mitochondrial 28S ribosomal protein
           S29-related | chr1:5770964-5773157 REVERSE LENGTH=480
          Length = 480

 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 112/145 (77%), Gaps = 1/145 (0%)

Query: 49  EQERLRRLAADEKDPSLDVGPDGRPLFT-SATSISKLTGKDSCTYFKLTKEALNEVLPEG 107
           E  R +RLA DEK PSLDVGP+GRPLFT   T++S+LT KD  +YFK  + AL  VLPEG
Sbjct: 98  EAGRAKRLADDEKIPSLDVGPNGRPLFTPKDTTLSQLTHKDIGSYFKFDEAALKAVLPEG 157

Query: 108 VPMGMVKEFQDSMRPALLVRQSFLDLRDNFRRIVDPPLWSPPGKGVKARKQVVLDGPVSC 167
           +  G+  EF +S RPALLVR+S+L LRDNFRRI DPP+W    KGVK +KQ+VLDGPV C
Sbjct: 158 LASGIEDEFNESWRPALLVRKSYLALRDNFRRIADPPMWPSDSKGVKLQKQIVLDGPVKC 217

Query: 168 GKSIALAMLVQWAREEGWLVFYVPQ 192
           GKSIALAMLV WAR+EGWLV Y P+
Sbjct: 218 GKSIALAMLVHWARDEGWLVLYAPK 242