Miyakogusa Predicted Gene

Lj0g3v0069039.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0069039.1 Non Chatacterized Hit- tr|Q9C9B8|Q9C9B8_ARATH
Putative uncharacterized protein F2P9.16 OS=Arabidopsi,68.12,2e-19,
,CUFF.3299.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73970.1 | Symbols:  | unknown protein; Has 34 Blast hits to ...   100   3e-22

>AT1G73970.1 | Symbols:  | unknown protein; Has 34 Blast hits to 33
           proteins in 15 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
           Eukaryotes - 2 (source: NCBI BLink). |
           chr1:27817140-27819963 FORWARD LENGTH=803
          Length = 803

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 58/69 (84%)

Query: 11  VGIQVLPNLMKLLAQLITKLPQDAQNIVLNELYSQVADSDDVIRKPTLVSWLQSLSYVCT 70
           V IQVLP LMK LAQL+ KLP++ QN+VL ELY QVA+SDDVIRKP+LVSWLQSL+Y+C+
Sbjct: 721 VDIQVLPYLMKSLAQLVIKLPKERQNVVLGELYGQVAESDDVIRKPSLVSWLQSLNYLCS 780

Query: 71  NSTNQNAAS 79
           N+  +  AS
Sbjct: 781 NNRTEVLAS 789