Miyakogusa Predicted Gene

Lj0g3v0068469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0068469.1 tr|G7IRI9|G7IRI9_MEDTR Condensin complex subunit
2 OS=Medicago truncatula GN=MTR_2g087880 PE=3
SV=1,69.14,0,Cnd2,Condensin complex subunit 2/barren; GB DEF:
HYPOTHETICAL PROTEIN AT2G32590,NULL; FAMILY NOT NAM,CUFF.3266.1
         (615 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32590.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...   627   e-179

>AT2G32590.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 17
           plant structures; EXPRESSED DURING: 9 growth stages;
           CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418);
           Has 467 Blast hits to 447 proteins in 202 species:
           Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168;
           Plants - 39; Viruses - 1; Other Eukaryotes - 108
           (source: NCBI BLink). | chr2:13829420-13833209 REVERSE
           LENGTH=671
          Length = 671

 Score =  627 bits (1616), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/603 (55%), Positives = 423/603 (70%), Gaps = 17/603 (2%)

Query: 17  TVSPNPTTAAPSKRLPVAARILSPTSPVFIGSNDDQVEXXXXXXXXXXXXXXKSLAAAAN 76
           +++PNP     S       RI +PTSP F+GSNDD++E              +S+  A  
Sbjct: 4   SLTPNPKQKPAS----TTTRIQAPTSPFFLGSNDDRLEREQARAARAAASRRRSVIFARG 59

Query: 77  FPSRDPDSDPCLTKDQILDLFHNCIKLAAENKINQKNTWELKLIDHLTDFIRTEEESDVE 136
               + +SDPC  K QIL+LF NCIKLA+ENKINQKNTWEL LIDHL + I+ E+E++ E
Sbjct: 60  -SQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118

Query: 137 TNFQIASCTLEAGVKIYSLRVDSVHSEAYKVLARMNRVGQEAEEDSTLDSVNAEDGHEES 196
           TNFQ ASCTLEAGVKIYS+RVDSVHSEAYKVL  + R G +   D   D+  A +     
Sbjct: 119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHE-DAAGAVENATNQ 177

Query: 197 KKGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYRHTSAQFDEGGAKGLLMNNLGVYG 256
           KK  +KK+SPLSTLE SF+ALNVKKFDVAFAVDPLY  TSAQFDEGGAKGLL+NNLGVYG
Sbjct: 178 KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYG 237

Query: 257 GCRVLFDSLEVPGKCIASQSEQDISDTIDLSFLRDCIEEMLLNMRMKDEISPTLRVIVNQ 316
           GC+VLFDS E+PGK ++S ++ D S+TIDLSF+++C+E+M+LNMR KDEI P+LR I+NQ
Sbjct: 238 GCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAIINQ 297

Query: 317 FDENNRRPSDFEFSGQKSAEEFGVDI--DCSIAAERGEYENFPSWCNDHDNQTFVAEQ-- 372
           FDE N+RPSD    GQ++ E F +    D S A +   YENF +   D++ Q+   ++  
Sbjct: 298 FDEENQRPSDTFSCGQQTTESFDISHGNDASYADDDEGYENFGT-SFDYEGQSGDVDENF 356

Query: 373 GSNDAEPSFSSYPQEKEPFPSQDSDMDGNFENVDEYIFLSLGLRSKKNAWAGPDHWKYGK 432
           G N+AEP +S++ +E EP   QD D D   ENVD+Y+FLSLG+ SK+N+WAGPDHWKY K
Sbjct: 357 GPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWKYRK 416

Query: 433 AKESVARCTSEDDSTLETRQPRAKRQDEDDLEFTSCLETKFPDIFCPPKNSKSLLLPENR 492
            K    +  SE  S+   ++ R K+Q E +L+F   LE + PDIF PPKN K+LLLP +R
Sbjct: 417 TKGPDVQPASEIKSSPPAKKTRKKKQAEPELDFAKALEEEMPDIFAPPKNPKTLLLPASR 476

Query: 493 PPCVTKLPEDCHYEPQDLVKLFLLPNVKCLGRRARKLS-DVSEEQGNDYESFPSWDNGGV 551
            PC TKLPEDCHY+P++L+KLFLLPNV CLGRR RK S + S +Q +DYE   SW N  V
Sbjct: 477 TPCQTKLPEDCHYQPENLIKLFLLPNVMCLGRRRRKNSGETSRQQPDDYEHGESWGNDNV 536

Query: 552 -----GDGEYDGDTHSDIDDPSTLISQPRRVNKIEVDYDKTSKQVDVQALKIALWDHIQE 606
                G  + + +  SD +D +TLISQPR+VNKI+V YDK SKQVDVQ LK  LW+ +QE
Sbjct: 537 YDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQYDKASKQVDVQVLKETLWECLQE 596

Query: 607 SIQ 609
           S Q
Sbjct: 597 SHQ 599