Miyakogusa Predicted Gene

Lj0g3v0068129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0068129.1 tr|F2E3C5|F2E3C5_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,48.87,8e-19,FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL,CUFF.3244.1
         (308 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32610.1 | Symbols:  | copper ion binding | chr4:15728376-157...    55   6e-08
AT2G25670.2 | Symbols:  | BEST Arabidopsis thaliana protein matc...    49   5e-06
AT2G25670.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    49   5e-06

>AT4G32610.1 | Symbols:  | copper ion binding |
          chr4:15728376-15729897 REVERSE LENGTH=315
          Length = 315

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 1  MVGGGSRREDAAAPPVSSTNIFAALGSLXXXXXXXXXXDEEGGSEKKD--------VFWA 52
          MVGGG+RR D  + P+ +TN+FAAL +             +  S+++D        VFWA
Sbjct: 1  MVGGGNRR-DEGSMPIQNTNLFAALDTSRKKKKSDKAGKSKASSKREDSQKEPEPQVFWA 59

Query: 53 PTPLAAKSWA 62
          PTPL AK+WA
Sbjct: 60 PTPLKAKAWA 69


>AT2G25670.2 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: copper ion binding (TAIR:AT4G32610.1); Has 43784
          Blast hits to 26928 proteins in 1799 species: Archae -
          86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398;
          Plants - 1931; Viruses - 259; Other Eukaryotes - 13792
          (source: NCBI BLink). | chr2:10929062-10930619 REVERSE
          LENGTH=318
          Length = 318

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 1  MVGGGSRREDAAAPPVSSTNIFAALGSLXXXXXXXXXXDEEGGSEKKD--------VFWA 52
          M GGG+RR D  +  + STN+FAAL +             +G S+ ++        V+WA
Sbjct: 1  MAGGGNRR-DEGSITIQSTNLFAALDTRKKKKKSDKAGKSKGSSKSREPEKEPEPQVYWA 59

Query: 53 PTPLAAKSWA 62
          PTPL  KSWA
Sbjct: 60 PTPLKVKSWA 69


>AT2G25670.1 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: copper ion binding (TAIR:AT4G32610.1); Has 43784
          Blast hits to 26928 proteins in 1799 species: Archae -
          86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398;
          Plants - 1931; Viruses - 259; Other Eukaryotes - 13792
          (source: NCBI BLink). | chr2:10929062-10930619 REVERSE
          LENGTH=318
          Length = 318

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 1  MVGGGSRREDAAAPPVSSTNIFAALGSLXXXXXXXXXXDEEGGSEKKD--------VFWA 52
          M GGG+RR D  +  + STN+FAAL +             +G S+ ++        V+WA
Sbjct: 1  MAGGGNRR-DEGSITIQSTNLFAALDTRKKKKKSDKAGKSKGSSKSREPEKEPEPQVYWA 59

Query: 53 PTPLAAKSWA 62
          PTPL  KSWA
Sbjct: 60 PTPLKVKSWA 69