Miyakogusa Predicted Gene

Lj0g3v0068109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0068109.1 Non Chatacterized Hit- tr|D8T2Y9|D8T2Y9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,42.98,2e-18,P-loop containing nucleoside triphosphate
hydrolases,NULL; AAA_19,NULL; no description,NULL; SUBFAMI,CUFF.3238.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35970.1 | Symbols:  | P-loop containing nucleoside triphosph...   163   3e-41

>AT5G35970.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14119060-14123078
           REVERSE LENGTH=961
          Length = 961

 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 94/110 (85%)

Query: 1   MLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDLADWAEESFNGILGSETFDNSQQRT 60
           MLLQKNGL+KKNPSISVVATLFGDGED+ WLE+ND  DW+E   +    S+ FD+SQ+R 
Sbjct: 435 MLLQKNGLQKKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQRRA 494

Query: 61  IALGLNKRRPVLVIEGPPGSGKSGLLKQLIVCAVQQGERVLVTAPTNLLI 110
           IALG+NK+RPV++++GPPG+GK+G+LK++I  AVQQGERVLVTAPTN  +
Sbjct: 495 IALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAV 544