Miyakogusa Predicted Gene

Lj0g3v0067919.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067919.1 tr|A9SX66|A9SX66_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110121,63.16,3e-18,Riboflavin synthase
domain-like,Riboflavin synthase-like beta-barrel; no description,NULL;
seg,NULL,CUFF.3230.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05390.1 | Symbols: ATRFNR1, RFNR1 | root FNR 1 | chr4:273883...   124   4e-29
AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:108071...   123   7e-29
AT1G30510.1 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:108071...   123   7e-29
AT1G30510.3 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:108071...   122   1e-28
AT4G05390.2 | Symbols: RFNR1 | root FNR 1 | chr4:2738839-2740483...   103   5e-23
AT5G66190.1 | Symbols: ATLFNR1, FNR1 | ferredoxin-NADP(+)-oxidor...    52   1e-07
AT1G20020.3 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreducta...    51   3e-07
AT1G20020.1 | Symbols: ATLFNR2, FNR2 | ferredoxin-NADP(+)-oxidor...    51   3e-07
AT1G20020.2 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreducta...    51   3e-07

>AT4G05390.1 | Symbols: ATRFNR1, RFNR1 | root FNR 1 |
           chr4:2738839-2740483 REVERSE LENGTH=378
          Length = 378

 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%), Gaps = 1/76 (1%)

Query: 5   VQQASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHG 63
           +QQ+S  KV+V+PLELE   E PLNL +PK+PYT TIVSVERIVGP+APGETCHIVIDH 
Sbjct: 64  LQQSSKSKVLVTPLELEDPKETPLNLFRPKEPYTATIVSVERIVGPQAPGETCHIVIDHD 123

Query: 64  GNVPYWEGQSYGFIPP 79
           GNVPYWEGQSYG IPP
Sbjct: 124 GNVPYWEGQSYGVIPP 139


>AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 |
           chr1:10807150-10808984 REVERSE LENGTH=382
          Length = 382

 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 66/80 (82%), Gaps = 1/80 (1%)

Query: 1   MSVPVQQASVPKVIVSPLELEAASEPPLNLHKPKQPYTT-IVSVERIVGPKAPGETCHIV 59
           + + VQQ S  KV VSP+ELE   +PPLNL+KPK+ YT  IVSVER+VGPKAPGETCHIV
Sbjct: 64  ICMSVQQTSSSKVTVSPIELEDPKDPPLNLYKPKESYTAKIVSVERVVGPKAPGETCHIV 123

Query: 60  IDHGGNVPYWEGQSYGFIPP 79
           IDH GN+PYWEGQSYG IPP
Sbjct: 124 IDHDGNLPYWEGQSYGVIPP 143


>AT1G30510.1 | Symbols: ATRFNR2, RFNR2 | root FNR 2 |
           chr1:10807150-10808984 REVERSE LENGTH=381
          Length = 381

 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 66/80 (82%), Gaps = 1/80 (1%)

Query: 1   MSVPVQQASVPKVIVSPLELEAASEPPLNLHKPKQPYTT-IVSVERIVGPKAPGETCHIV 59
           + + VQQ S  KV VSP+ELE   +PPLNL+KPK+ YT  IVSVER+VGPKAPGETCHIV
Sbjct: 63  ICMSVQQTSSSKVTVSPIELEDPKDPPLNLYKPKESYTAKIVSVERVVGPKAPGETCHIV 122

Query: 60  IDHGGNVPYWEGQSYGFIPP 79
           IDH GN+PYWEGQSYG IPP
Sbjct: 123 IDHDGNLPYWEGQSYGVIPP 142


>AT1G30510.3 | Symbols: ATRFNR2, RFNR2 | root FNR 2 |
          chr1:10807150-10808292 REVERSE LENGTH=317
          Length = 317

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 5  VQQASVPKVIVSPLELEAASEPPLNLHKPKQPYTT-IVSVERIVGPKAPGETCHIVIDHG 63
          VQQ S  KV VSP+ELE   +PPLNL+KPK+ YT  IVSVER+VGPKAPGETCHIVIDH 
Sbjct: 3  VQQTSSSKVTVSPIELEDPKDPPLNLYKPKESYTAKIVSVERVVGPKAPGETCHIVIDHD 62

Query: 64 GNVPYWEGQSYGFIPP 79
          GN+PYWEGQSYG IPP
Sbjct: 63 GNLPYWEGQSYGVIPP 78


>AT4G05390.2 | Symbols: RFNR1 | root FNR 1 | chr4:2738839-2740483
           REVERSE LENGTH=350
          Length = 350

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 51/57 (89%), Gaps = 1/57 (1%)

Query: 24  SEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFIPP 79
            E PLNL +PK+PYT TIVSVERIVGP+APGETCHIVIDH GNVPYWEGQSYG IPP
Sbjct: 55  KETPLNLFRPKEPYTATIVSVERIVGPQAPGETCHIVIDHDGNVPYWEGQSYGVIPP 111


>AT5G66190.1 | Symbols: ATLFNR1, FNR1 |
           ferredoxin-NADP(+)-oxidoreductase 1 |
           chr5:26451203-26453012 REVERSE LENGTH=360
          Length = 360

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 28  LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFIPPVSD 82
           +N  KPK PYT    +  +I G  APGET HIV    G VPY EGQS G IP   D
Sbjct: 75  VNKFKPKNPYTGRCLLNTKITGDDAPGETWHIVFTTEGEVPYREGQSIGVIPEGID 130


>AT1G20020.3 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreductase
           2 | chr1:6942851-6944868 FORWARD LENGTH=369
          Length = 369

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 28  LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFIPPVSD 82
           +N ++PK+PYT    +  +I    APGET H+V  H G +PY EGQS G I    D
Sbjct: 84  VNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGKIPYREGQSVGVIADGID 139


>AT1G20020.1 | Symbols: ATLFNR2, FNR2 |
           ferredoxin-NADP(+)-oxidoreductase 2 |
           chr1:6942851-6944868 FORWARD LENGTH=369
          Length = 369

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 28  LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFIPPVSD 82
           +N ++PK+PYT    +  +I    APGET H+V  H G +PY EGQS G I    D
Sbjct: 84  VNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIPYREGQSVGVIADGID 139


>AT1G20020.2 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreductase
           2 | chr1:6942851-6944868 FORWARD LENGTH=350
          Length = 350

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 28  LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFI 77
           +N ++PK+PYT    +  +I    APGET H+V  H G +PY EGQS G I
Sbjct: 84  VNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIPYREGQSVGVI 134