Miyakogusa Predicted Gene

Lj0g3v0067909.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067909.2 tr|A9SX66|A9SX66_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110121,56.98,2e-18,no description,NULL; seg,NULL;
Riboflavin synthase domain-like,Riboflavin synthase-like
beta-barrel,CUFF.3229.2
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05390.1 | Symbols: ATRFNR1, RFNR1 | root FNR 1 | chr4:273883...   152   1e-37
AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:108071...   135   3e-32
AT1G30510.1 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:108071...   134   5e-32
AT1G30510.3 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:108071...   123   1e-28
AT4G05390.2 | Symbols: RFNR1 | root FNR 1 | chr4:2738839-2740483...   107   5e-24
AT5G66190.1 | Symbols: ATLFNR1, FNR1 | ferredoxin-NADP(+)-oxidor...    57   1e-08
AT1G20020.3 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreducta...    52   4e-07
AT1G20020.1 | Symbols: ATLFNR2, FNR2 | ferredoxin-NADP(+)-oxidor...    52   4e-07
AT1G20020.2 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreducta...    52   4e-07

>AT4G05390.1 | Symbols: ATRFNR1, RFNR1 | root FNR 1 |
           chr4:2738839-2740483 REVERSE LENGTH=378
          Length = 378

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 96/134 (71%), Gaps = 5/134 (3%)

Query: 30  KMAVTAPVGSDLSIRRSGFKASNFNFWDNSWAP-VFTLDLKANSSCVRSRQVICMSVPVQ 88
           +M+V  P   D S  RS  K  + +F D SW P +  LD K+ S  V+ R  ICMS+  Q
Sbjct: 9   QMSVALPTRIDGS-SRSMIKVQSISFTDKSWGPPLLRLDSKSRSLGVKKRSTICMSL--Q 65

Query: 89  QASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHGGN 147
           Q+S  KV+V+PLELE   E PLNL +PK+PYT TIVSVERIVGP+APGETCHIVIDH GN
Sbjct: 66  QSSKSKVLVTPLELEDPKETPLNLFRPKEPYTATIVSVERIVGPQAPGETCHIVIDHDGN 125

Query: 148 VPYWEGQSYGFIPP 161
           VPYWEGQSYG IPP
Sbjct: 126 VPYWEGQSYGVIPP 139


>AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 |
           chr1:10807150-10808984 REVERSE LENGTH=382
          Length = 382

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 94/136 (69%), Gaps = 9/136 (6%)

Query: 32  AVTAPVGSDLSIRRSGFKASNFNFWDNSWAPVFTLDLKANSSCVRSRQ-----VICMSVP 86
           AV+  + +  S+RRS FK +N +   NS +   +L L   ++ +R  +      ICMSV 
Sbjct: 11  AVSVSIENQRSLRRSVFKQNN-SISFNSKSWSSSLALNQKTTSIRDGKRYPSTTICMSV- 68

Query: 87  VQQASVPKVIVSPLELEAASEPPLNLHKPKQPYTT-IVSVERIVGPKAPGETCHIVIDHG 145
            QQ S  KV VSP+ELE   +PPLNL+KPK+ YT  IVSVER+VGPKAPGETCHIVIDH 
Sbjct: 69  -QQTSSSKVTVSPIELEDPKDPPLNLYKPKESYTAKIVSVERVVGPKAPGETCHIVIDHD 127

Query: 146 GNVPYWEGQSYGFIPP 161
           GN+PYWEGQSYG IPP
Sbjct: 128 GNLPYWEGQSYGVIPP 143


>AT1G30510.1 | Symbols: ATRFNR2, RFNR2 | root FNR 2 |
           chr1:10807150-10808984 REVERSE LENGTH=381
          Length = 381

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 92/134 (68%), Gaps = 6/134 (4%)

Query: 32  AVTAPVGSDLSIRRSGFKASNFNFWDNSWAPVFTLDLKANSSCVRSR---QVICMSVPVQ 88
           AV+  + +  S+RRS FK ++ +F   SW+    L+ K  S     R     ICMSV  Q
Sbjct: 11  AVSVSIENQRSLRRSVFKNNSISFNSKSWSSSLALNQKTTSIRDGKRYPSTTICMSV--Q 68

Query: 89  QASVPKVIVSPLELEAASEPPLNLHKPKQPYTT-IVSVERIVGPKAPGETCHIVIDHGGN 147
           Q S  KV VSP+ELE   +PPLNL+KPK+ YT  IVSVER+VGPKAPGETCHIVIDH GN
Sbjct: 69  QTSSSKVTVSPIELEDPKDPPLNLYKPKESYTAKIVSVERVVGPKAPGETCHIVIDHDGN 128

Query: 148 VPYWEGQSYGFIPP 161
           +PYWEGQSYG IPP
Sbjct: 129 LPYWEGQSYGVIPP 142


>AT1G30510.3 | Symbols: ATRFNR2, RFNR2 | root FNR 2 |
           chr1:10807150-10808292 REVERSE LENGTH=317
          Length = 317

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 87  VQQASVPKVIVSPLELEAASEPPLNLHKPKQPYTT-IVSVERIVGPKAPGETCHIVIDHG 145
           VQQ S  KV VSP+ELE   +PPLNL+KPK+ YT  IVSVER+VGPKAPGETCHIVIDH 
Sbjct: 3   VQQTSSSKVTVSPIELEDPKDPPLNLYKPKESYTAKIVSVERVVGPKAPGETCHIVIDHD 62

Query: 146 GNVPYWEGQSYGFIPP 161
           GN+PYWEGQSYG IPP
Sbjct: 63  GNLPYWEGQSYGVIPP 78


>AT4G05390.2 | Symbols: RFNR1 | root FNR 1 | chr4:2738839-2740483
           REVERSE LENGTH=350
          Length = 350

 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 76/134 (56%), Gaps = 33/134 (24%)

Query: 30  KMAVTAPVGSDLSIRRSGFKASNFNFWDNSWAP-VFTLDLKANSSCVRSRQVICMSVPVQ 88
           +M+V  P   D S  RS  K  + +F D SW P +  LD K+ S                
Sbjct: 9   QMSVALPTRIDGS-SRSMIKVQSISFTDKSWGPPLLRLDSKSRS---------------- 51

Query: 89  QASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHGGN 147
                   + P       E PLNL +PK+PYT TIVSVERIVGP+APGETCHIVIDH GN
Sbjct: 52  --------LDP------KETPLNLFRPKEPYTATIVSVERIVGPQAPGETCHIVIDHDGN 97

Query: 148 VPYWEGQSYGFIPP 161
           VPYWEGQSYG IPP
Sbjct: 98  VPYWEGQSYGVIPP 111


>AT5G66190.1 | Symbols: ATLFNR1, FNR1 |
           ferredoxin-NADP(+)-oxidoreductase 1 |
           chr5:26451203-26453012 REVERSE LENGTH=360
          Length = 360

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 68  LKANSSCVRSRQVICMSVPVQQASVPKVIVSPLELEAASEPPLNLHKPKQPYTTIVSVE- 126
           LK ++ C R    +   V       P V V     +      +N  KPK PYT    +  
Sbjct: 33  LKKSTVCYRRVVSVKAQVTTDTTEAPPVKVVKESKKQEEGIVVNKFKPKNPYTGRCLLNT 92

Query: 127 RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFIPPVSD 164
           +I G  APGET HIV    G VPY EGQS G IP   D
Sbjct: 93  KITGDDAPGETWHIVFTTEGEVPYREGQSIGVIPEGID 130


>AT1G20020.3 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreductase
           2 | chr1:6942851-6944868 FORWARD LENGTH=369
          Length = 369

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 110 LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFI 159
           +N ++PK+PYT    +  +I    APGET H+V  H G +PY EGQS G I
Sbjct: 84  VNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGKIPYREGQSVGVI 134


>AT1G20020.1 | Symbols: ATLFNR2, FNR2 |
           ferredoxin-NADP(+)-oxidoreductase 2 |
           chr1:6942851-6944868 FORWARD LENGTH=369
          Length = 369

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 110 LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFI 159
           +N ++PK+PYT    +  +I    APGET H+V  H G +PY EGQS G I
Sbjct: 84  VNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIPYREGQSVGVI 134


>AT1G20020.2 | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreductase
           2 | chr1:6942851-6944868 FORWARD LENGTH=350
          Length = 350

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 110 LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFI 159
           +N ++PK+PYT    +  +I    APGET H+V  H G +PY EGQS G I
Sbjct: 84  VNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIPYREGQSVGVI 134