Miyakogusa Predicted Gene

Lj0g3v0067359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067359.1 Non Chatacterized Hit- tr|I1KG47|I1KG47_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.44670
PE,79.73,0,seg,NULL; 2-Hacid_dh,D-isomer specific 2-hydroxyacid
dehydrogenase, catalytic domain; 2-Hacid_dh_C,D,CUFF.3202.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17745.1 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase...   349   2e-96
AT3G19480.1 | Symbols:  | D-3-phosphoglycerate dehydrogenase | c...   335   2e-92
AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase...   333   8e-92
AT1G17745.2 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase...   329   2e-90
AT1G68010.1 | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase |...    69   6e-12
AT1G68010.2 | Symbols: HPR | hydroxypyruvate reductase | chr1:25...    69   6e-12
AT1G72190.1 | Symbols:  | D-isomer specific 2-hydroxyacid dehydr...    55   5e-08
AT1G79870.1 | Symbols:  | D-isomer specific 2-hydroxyacid dehydr...    55   6e-08
AT5G14780.1 | Symbols: FDH | formate dehydrogenase | chr5:477704...    53   2e-07
AT1G12550.1 | Symbols:  | D-isomer specific 2-hydroxyacid dehydr...    52   3e-07

>AT1G17745.1 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase |
           chr1:6101157-6104979 FORWARD LENGTH=624
          Length = 624

 Score =  349 bits (895), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/210 (80%), Positives = 185/210 (88%)

Query: 88  KPTILVSEKLGDAGIQVLREFGHVECSYDLSPEELCKKISSCDALIVRSGTKVTREVFEA 147
           KP ILV+EKLG+AG+ +LREFG V+CSYDLSPE+L KK++  DALIVRSGTKVTREVFEA
Sbjct: 82  KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141

Query: 148 SKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQAD 207
           +KGRLKVVGRAGVGIDNVDLQAATE GCLVVNAPTANT               RNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201

Query: 208 AALKAGKWLRSKYVGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARA 267
           A++KAGKW RSKYVGVS+VGKTLAVMGFGKVG+EVARRAKGLGM VI+HDPYAPADRARA
Sbjct: 202 ASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARA 261

Query: 268 IGVELVSFDQAISTADFISLHMPLTPATNK 297
           +GV+LVSFDQAISTADF+SLHMPLTPAT K
Sbjct: 262 LGVDLVSFDQAISTADFVSLHMPLTPATKK 291


>AT3G19480.1 | Symbols:  | D-3-phosphoglycerate dehydrogenase |
           chr3:6752590-6754650 FORWARD LENGTH=588
          Length = 588

 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/210 (76%), Positives = 183/210 (87%)

Query: 88  KPTILVSEKLGDAGIQVLREFGHVECSYDLSPEELCKKISSCDALIVRSGTKVTREVFEA 147
           KPTILV+EKLG AGI +L+++ +V+CSYDLS EELC KIS CDALIVRSGTKV R+VFE+
Sbjct: 46  KPTILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFES 105

Query: 148 SKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQAD 207
           S+GRLKVVGRAGVGIDNVDL AATE+GCLVVNAPTANT               RN+AQAD
Sbjct: 106 SRGRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQAD 165

Query: 208 AALKAGKWLRSKYVGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARA 267
           A++KAGKW R+KYVGVS+VGKTLAV+GFGKVGSEVARRA+GLGM+VI HDPYAPADRARA
Sbjct: 166 ASIKAGKWTRNKYVGVSLVGKTLAVLGFGKVGSEVARRARGLGMHVITHDPYAPADRARA 225

Query: 268 IGVELVSFDQAISTADFISLHMPLTPATNK 297
           IGVELVSF+ AISTADFISLH+PLT AT+K
Sbjct: 226 IGVELVSFEVAISTADFISLHLPLTAATSK 255


>AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase |
           chr4:16374041-16376561 REVERSE LENGTH=603
          Length = 603

 Score =  333 bits (855), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 160/210 (76%), Positives = 182/210 (86%)

Query: 88  KPTILVSEKLGDAGIQVLREFGHVECSYDLSPEELCKKISSCDALIVRSGTKVTREVFEA 147
           KPTILV+EKLGDAGI++L +  +V+CSY+++PEEL  KIS CDALIVRSGTKV REVFE+
Sbjct: 61  KPTILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFES 120

Query: 148 SKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQAD 207
           S GRLKVVGRAGVGIDNVDL AATEFGCLVVNAPTANT               RNVAQAD
Sbjct: 121 SHGRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQAD 180

Query: 208 AALKAGKWLRSKYVGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARA 267
           A++KAG+W R+KYVGVS+VGKTLAV+GFGKVG+EVARRAKGLGM VIAHDPYAPADRA A
Sbjct: 181 ASVKAGEWKRNKYVGVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHA 240

Query: 268 IGVELVSFDQAISTADFISLHMPLTPATNK 297
           IGV+LVSFD+A++TADFISLHMPLTP T+K
Sbjct: 241 IGVDLVSFDEALATADFISLHMPLTPTTSK 270


>AT1G17745.2 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase |
           chr1:6101157-6104979 FORWARD LENGTH=651
          Length = 651

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 185/237 (78%), Gaps = 27/237 (11%)

Query: 88  KPTILVSEKLGDAGIQVLREFGHVECSYDLSPEELCKKISSCDALIVRSGTKVTREVFEA 147
           KP ILV+EKLG+AG+ +LREFG V+CSYDLSPE+L KK++  DALIVRSGTKVTREVFEA
Sbjct: 82  KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141

Query: 148 SKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQAD 207
           +KGRLKVVGRAGVGIDNVDLQAATE GCLVVNAPTANT               RNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201

Query: 208 AALKAG-----------KW----------------LRSKYVGVSMVGKTLAVMGFGKVGS 240
           A++KAG           +W                 RSKYVGVS+VGKTLAVMGFGKVG+
Sbjct: 202 ASIKAGTLNYLFLVLLLRWNCRQSKHQYTIETETEKRSKYVGVSLVGKTLAVMGFGKVGT 261

Query: 241 EVARRAKGLGMNVIAHDPYAPADRARAIGVELVSFDQAISTADFISLHMPLTPATNK 297
           EVARRAKGLGM VI+HDPYAPADRARA+GV+LVSFDQAISTADF+SLHMPLTPAT K
Sbjct: 262 EVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKK 318


>AT1G68010.1 | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase |
           chr1:25493418-25495720 FORWARD LENGTH=386
          Length = 386

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 117 LSPEELCKKI-SSCDALIVRSGTKVTREVFEA-SKGRLKVVGRAGVGIDNVDLQAATEFG 174
           LS E++   I   CD +I +        +F A SK   K      VG +NVD++AA ++G
Sbjct: 50  LSVEDIIDLIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYG 109

Query: 175 CLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAG---KWLRSKYVGVSMVGKTLA 231
             V N P   T               R + +AD  ++ G    WL   +VG  + G+T+ 
Sbjct: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVG 169

Query: 232 VMGFGKVGSEVAR-RAKGLGMNVIAHDPY----------APADRARAIGVELVSFDQAIS 280
           V+G G++GS  AR   +G  MN+I  D Y          A     +A G + V++ +A S
Sbjct: 170 VIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASS 229

Query: 281 ------TADFISLHMPLTPAT 295
                  AD ISLH  L   T
Sbjct: 230 MEEVLREADLISLHPVLDKTT 250


>AT1G68010.2 | Symbols: HPR | hydroxypyruvate reductase |
           chr1:25493418-25495720 FORWARD LENGTH=387
          Length = 387

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 117 LSPEELCKKI-SSCDALIVRSGTKVTREVFEA-SKGRLKVVGRAGVGIDNVDLQAATEFG 174
           LS E++   I   CD +I +        +F A SK   K      VG +NVD++AA ++G
Sbjct: 50  LSVEDIIDLIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYG 109

Query: 175 CLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAG---KWLRSKYVGVSMVGKTLA 231
             V N P   T               R + +AD  ++ G    WL   +VG  + G+T+ 
Sbjct: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVG 169

Query: 232 VMGFGKVGSEVAR-RAKGLGMNVIAHDPY----------APADRARAIGVELVSFDQAIS 280
           V+G G++GS  AR   +G  MN+I  D Y          A     +A G + V++ +A S
Sbjct: 170 VIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASS 229

Query: 281 ------TADFISLHMPLTPAT 295
                  AD ISLH  L   T
Sbjct: 230 MEEVLREADLISLHPVLDKTT 250


>AT1G72190.1 | Symbols:  | D-isomer specific 2-hydroxyacid
           dehydrogenase family protein | chr1:27167458-27169696
           REVERSE LENGTH=373
          Length = 373

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 121 ELCKKISSCDALIVRSGTKVTREVFEASKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 180
           E+ K    C A+ ++  + V      +    +K++ + GVG+D VD+ AAT+ G  V   
Sbjct: 90  EVIKNYHICVAMTMQMDSNVI-----SRASNIKLIMQYGVGLDGVDIDAATKHGIKVARI 144

Query: 181 P---TANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLRSKYVGVSMVGKTLAVMGFGK 237
           P   T N                +   +   +L+    L  +  G +++GKT+ ++G+G 
Sbjct: 145 PSEGTGNAASCSEMAIYLMLGLLKKQNEMQISLR--NRLLGEPTGDTLLGKTVFILGYGN 202

Query: 238 VGSEVARRAKGLGMNVIAHDPYAPA 262
           +G E+A+R K  G  VIA   + PA
Sbjct: 203 IGIELAKRLKPFGSRVIATKRFWPA 227


>AT1G79870.1 | Symbols:  | D-isomer specific 2-hydroxyacid
           dehydrogenase family protein | chr1:30044794-30045851
           FORWARD LENGTH=313
          Length = 313

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 152 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAALK 211
           L++V    VG+D +DL    E G  V N P   T               R + + D  ++
Sbjct: 68  LEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVR 127

Query: 212 AGKWLRSKY-VGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIGV 270
           +GKW + ++ +     GK++ ++G G++G+ +A+RA+     +  +      D A     
Sbjct: 128 SGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYP 187

Query: 271 ELVSFDQAISTADFISLHMPLTPAT 295
            +V   Q    +D + +  PLT  T
Sbjct: 188 TVVDLAQ---NSDILVVACPLTEQT 209


>AT5G14780.1 | Symbols: FDH | formate dehydrogenase |
           chr5:4777043-4779190 FORWARD LENGTH=384
          Length = 384

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 4/142 (2%)

Query: 158 AGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLR 217
           AG+G D++DLQAA   G  V     +N                RN       +  G+W  
Sbjct: 126 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 185

Query: 218 S--KYVGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DRARAIGVELVS 274
           +   Y    + GKT+  +G G++G  + +R K  G N++ HD    A +  +  G + V 
Sbjct: 186 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 245

Query: 275 -FDQAISTADFISLHMPLTPAT 295
             ++ +   D I ++MPLT  T
Sbjct: 246 DLNEMLPKCDVIVINMPLTEKT 267


>AT1G12550.1 | Symbols:  | D-isomer specific 2-hydroxyacid
           dehydrogenase family protein | chr1:4274649-4275831
           FORWARD LENGTH=323
          Length = 323

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 119 PEELCKKISSCDALIVRSGTKVTREVFEASKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 178
           P    +  SS  A ++     VT E+  +    L+++    VGID++DL A    G ++ 
Sbjct: 43  PSFFPRHASSARAFVISGRLPVTDELL-SHLPSLQILVCTSVGIDHIDLAACKRRGIVIT 101

Query: 179 NAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLR--SKYVGVSMVGKTLAVMGFG 236
           NA  A +               R +  AD  +++G W +     +G  + GK + ++G G
Sbjct: 102 NAGNAFSDDVADCAVGLLISVLRRIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLG 161

Query: 237 KVGSEVARRAKGLG 250
            +GS VA+R +  G
Sbjct: 162 SIGSFVAKRLESFG 175