Miyakogusa Predicted Gene

Lj0g3v0067139.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067139.1 tr|Q0QFS0|Q0QFS0_9EUKA DNA-directed RNA
polymerase (Fragment) OS=Paravahlkampfia sp. LA GN=mtRNAP
PE,45.98,3e-19,DNA/RNA polymerases,NULL; DNA-DIRECTED RNA POLYMERASE,
MITOCHONDRIAL,DNA-directed RNA polymerase, ph,CUFF.3170.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68990.2 | Symbols: MGP3 | male gametophyte defective 3 | chr...   151   9e-38
AT1G68990.1 | Symbols: MGP3 | male gametophyte defective 3 | chr...   151   9e-38
AT2G24120.1 | Symbols: PDE319, SCA3 | DNA/RNA polymerases superf...   147   2e-36
AT5G15700.1 | Symbols:  | DNA/RNA polymerases superfamily protei...   145   5e-36
AT5G15700.2 | Symbols:  | DNA/RNA polymerases superfamily protei...   126   3e-30

>AT1G68990.2 | Symbols: MGP3 | male gametophyte defective 3 |
           chr1:25935499-25940755 REVERSE LENGTH=983
          Length = 983

 Score =  151 bits (381), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 75/87 (86%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC+ AGL FAGVHDSFWTHACDV++MN ILRE FVELY+ PILENLLE FQ  +
Sbjct: 897 MMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSF 956

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P ++FP LP+ GDFDLRKVL+S YFFN
Sbjct: 957 PDISFPPLPERGDFDLRKVLESTYFFN 983


>AT1G68990.1 | Symbols: MGP3 | male gametophyte defective 3 |
           chr1:25935499-25940755 REVERSE LENGTH=976
          Length = 976

 Score =  151 bits (381), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 75/87 (86%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC+ AGL FAGVHDSFWTHACDV++MN ILRE FVELY+ PILENLLE FQ  +
Sbjct: 890 MMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSF 949

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P ++FP LP+ GDFDLRKVL+S YFFN
Sbjct: 950 PDISFPPLPERGDFDLRKVLESTYFFN 976


>AT2G24120.1 | Symbols: PDE319, SCA3 | DNA/RNA polymerases
           superfamily protein | chr2:10249358-10254530 REVERSE
           LENGTH=993
          Length = 993

 Score =  147 bits (370), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC +AGL FAGVHDS+WTHACDV+ MNRILRE FVELY+ PILE+LL+ FQ  Y
Sbjct: 907 MMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESY 966

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P L FP +PK GDFDL++VL S YFFN
Sbjct: 967 PNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>AT5G15700.1 | Symbols:  | DNA/RNA polymerases superfamily protein |
            chr5:5115793-5121609 REVERSE LENGTH=1011
          Length = 1011

 Score =  145 bits (367), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/87 (72%), Positives = 71/87 (81%)

Query: 1    MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
            MMMTA+AC  AG+CFAGVHDSFWTHACDV+ +N ILRE FVELY  PILENLLE F+  +
Sbjct: 925  MMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSF 984

Query: 61   PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
            P L FP LP+ GD DL+ VLDSPYFFN
Sbjct: 985  PHLDFPPLPERGDLDLKVVLDSPYFFN 1011


>AT5G15700.2 | Symbols:  | DNA/RNA polymerases superfamily protein |
            chr5:5115572-5121609 REVERSE LENGTH=1051
          Length = 1051

 Score =  126 bits (316), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 66/84 (78%), Gaps = 1/84 (1%)

Query: 1    MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
            MMMTA+AC  AG+CFAGVHDSFWTHACDV+ +N ILRE FVELY  PILENLLE F+  +
Sbjct: 925  MMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSF 984

Query: 61   PGLAFPSLPKTGDFDLR-KVLDSP 83
            P L FP LP+ GD DL+  ++ +P
Sbjct: 985  PHLDFPPLPERGDLDLKVNIVSTP 1008