Miyakogusa Predicted Gene

Lj0g3v0066949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066949.1 Non Chatacterized Hit- tr|I1H847|I1H847_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,45.95,5e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Protein of
unknown function DUF647,CUFF.3152.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13770.1 | Symbols: RUS3 | Protein of unknown function, DUF64...   115   1e-26
AT1G13770.2 | Symbols: RUS3 | Protein of unknown function, DUF64...   115   1e-26

>AT1G13770.1 | Symbols: RUS3 | Protein of unknown function, DUF647 |
           chr1:4721717-4724345 FORWARD LENGTH=440
          Length = 440

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 2/125 (1%)

Query: 4   TSWSSKKAYSLDKKVHLGTRISSFDNMEIKEHLLS-AASYYTKAKYLLVERKGMINVIVH 62
           TS  S  +  L K+V LG R+SS   +++ + L    AS Y  AKYLL   KG ++VI+H
Sbjct: 303 TSLRSTNSKPLHKRVQLGVRVSSLPRLDMLQLLNGVGASSYKNAKYLLAHIKGNVSVILH 362

Query: 63  KDTNAVDVLRSFVHALVLANNVHKIKSLHSEGQMWMENQYEVFIQKLKSLGWKTERLLSP 122
           KD+   DVL+S++HA+VLAN + K  S +SEG+ W++  Y+  + KL+S GWKTERLLSP
Sbjct: 363 KDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEAWIDKHYDELLHKLRSGGWKTERLLSP 422

Query: 123 -IIWR 126
            I WR
Sbjct: 423 SITWR 427


>AT1G13770.2 | Symbols: RUS3 | Protein of unknown function, DUF647 |
           chr1:4722243-4724345 FORWARD LENGTH=353
          Length = 353

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 2/125 (1%)

Query: 4   TSWSSKKAYSLDKKVHLGTRISSFDNMEIKEHLLS-AASYYTKAKYLLVERKGMINVIVH 62
           TS  S  +  L K+V LG R+SS   +++ + L    AS Y  AKYLL   KG ++VI+H
Sbjct: 216 TSLRSTNSKPLHKRVQLGVRVSSLPRLDMLQLLNGVGASSYKNAKYLLAHIKGNVSVILH 275

Query: 63  KDTNAVDVLRSFVHALVLANNVHKIKSLHSEGQMWMENQYEVFIQKLKSLGWKTERLLSP 122
           KD+   DVL+S++HA+VLAN + K  S +SEG+ W++  Y+  + KL+S GWKTERLLSP
Sbjct: 276 KDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEAWIDKHYDELLHKLRSGGWKTERLLSP 335

Query: 123 -IIWR 126
            I WR
Sbjct: 336 SITWR 340