Miyakogusa Predicted Gene

Lj0g3v0066829.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066829.2 tr|I0YVG9|I0YVG9_9CHLO RNB-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,32.32,0.00000000000003,RIBONUCLEASE II,NULL; RIBONUCLEASE,NULL;
coiled-coil,NULL; seg,NULL,CUFF.3144.2
         (363 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02250.1 | Symbols: EMB2730, RNR1, ATMTRNASEII | Ribonuclease...   407   e-114

>AT5G02250.1 | Symbols: EMB2730, RNR1, ATMTRNASEII | Ribonuclease
           II/R family protein | chr5:454902-459063 FORWARD
           LENGTH=803
          Length = 803

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/377 (55%), Positives = 262/377 (69%), Gaps = 15/377 (3%)

Query: 1   MAVRAVNTCCFFRPHS----PPLS-----------TAVRFFSRYRRPHPLFFXXXXXXXG 45
           M+VRA+N C   R  +    PP+S           + +R FS+ R   PL          
Sbjct: 2   MSVRAINGCSIIRTATSAGGPPVSLFRHRIQRLRASHLREFSKLRLNFPLIRADRRFLGN 61

Query: 46  YGARIQRRSIQSLFDSVIEELQAMXXXXXXXXSAAAPSSNTGLFNGELLEDRLLNRSLQK 105
             A      I SL +SV EEL+++           A         GE+LED+L+N+ L+ 
Sbjct: 62  SDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQELEA 121

Query: 106 GLLLEFKKDSERILLAVAQRPDGKKNWMVSDQNGVSSSIKPQQVTFIVPGIDNFDRADIA 165
           GLLLEFKKD++R+LLAV  R DGKKNWMV DQNGVS SIKPQQ+T+IVP + NFD   + 
Sbjct: 122 GLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDHTGLT 181

Query: 166 DFVQKAQDNMDPSLLEFAWIELLEKNKSVTVEELAEIIFGSAEPLESYSAHLLLSKDEVY 225
           DF+Q+AQDN+DP LLEFAW+ELLEKNK VT EELAE+I+G A+PLESY AH LLS+DE+Y
Sbjct: 182 DFLQRAQDNLDPQLLEFAWMELLEKNKPVTPEELAEMIYGRADPLESYCAHFLLSQDEIY 241

Query: 226 FSVLETKGFRSIYGPRPSEQVEELIRRKIAKEAAENEFQEFIKLLASAKSMPRQDKPSKS 285
           FS+LE+KG RSIY PRP+EQVEEL+RR+  KEA + EFQEFI+LL SAK  P   KP KS
Sbjct: 242 FSILESKGSRSIYSPRPTEQVEELLRRQRVKEAEDKEFQEFIQLLKSAKKAPSHAKPPKS 301

Query: 286 SWVNEEKNWSRIESLQAYALDSCKNDEQRKTAGAILKEMGLAKTASSAVNLLVDIGYFPV 345
           SW+ ++K   RI SL+AYA+D+  + +Q+K AG ILK MGL KT+ SA+NLL+DIGYFPV
Sbjct: 302 SWLADDKVQDRIGSLEAYAIDAWASTDQQKLAGTILKSMGLQKTSVSALNLLIDIGYFPV 361

Query: 346 HVNLELLKLGIPTDHSE 362
           HVNLELLKL +PT HSE
Sbjct: 362 HVNLELLKLNLPTHHSE 378