Miyakogusa Predicted Gene

Lj0g3v0066379.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066379.1 Non Chatacterized Hit- tr|K4C9C3|K4C9C3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,35.29,8e-16,LEA_2,Late embryogenesis abundant protein,
LEA-14,CUFF.3110.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27260.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    84   2e-17

>AT2G27260.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr2:11669769-11670500 FORWARD LENGTH=243
          Length = 243

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 1   MSVTYNGLRSSLFYRSDYITENNLAPFKQDTKSQTTLNATFSAAGAYIGTRAVDSINADR 60
           MS+ Y     +++Y    ++E  L PF Q  K QT +NAT S +G Y+  R VDSI  +R
Sbjct: 125 MSLHYETALCAMYYNRVSLSETRLQPFDQGKKDQTVVNATLSVSGTYVDGRLVDSIGKER 184

Query: 61  S-GGSVPLDVQILASASFRSGKWRFRTRWLKVLCRKLPVSIKSNSTSGDLIGGSRECQVW 119
           S  G+V  D+++++  +FR G +R R R++ V C  + V +  +S  G ++G S+ C+ +
Sbjct: 185 SVKGNVEFDLRMISYVTFRYGAFR-RRRYVTVYCDDVAVGVPVSSGEGKMVGSSKRCKTY 243