Miyakogusa Predicted Gene

Lj0g3v0066309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066309.1 Non Chatacterized Hit- tr|G7JR32|G7JR32_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,63.41,1e-17,seg,NULL,CUFF.3103.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05858.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    69   5e-13
AT5G26620.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    67   2e-12

>AT3G05858.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT5G26620.1);
          Has 30201 Blast hits to 17322 proteins in 780 species:
          Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
          3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
          2996 (source: NCBI BLink). | chr3:1749464-1749736
          FORWARD LENGTH=90
          Length = 90

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 26 DNYWEGSGTGRRMFASDEDRGYWVAEPGIDRKASDFIARYYANRVTDSERQFAS 79
          D  W+  G  R+  ASDED+ YWVAEPGIDRKAS FIA+++A RV++SERQ  S
Sbjct: 30 DGSWDDFGYTRKAMASDEDKRYWVAEPGIDRKASAFIAKFHATRVSESERQTLS 83


>AT5G26620.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in
          8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
          - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0
          (source: NCBI BLink). | chr5:9366697-9366963 REVERSE
          LENGTH=74
          Length = 74

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 41/51 (80%)

Query: 26 DNYWEGSGTGRRMFASDEDRGYWVAEPGIDRKASDFIARYYANRVTDSERQ 76
          D  W+     R+ +ASDED+ YWVAEPGIDRKAS FIA+++A+RV++SERQ
Sbjct: 14 DASWDDVIYTRKAWASDEDKRYWVAEPGIDRKASAFIAKFHASRVSESERQ 64