Miyakogusa Predicted Gene

Lj0g3v0066299.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066299.2 tr|A9RHM9|A9RHM9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.39,4e-17,unchar_dom_1: uncharacterized domain
1,Phenylacetic acid degradation-related domain; no
description,,CUFF.3109.2
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48320.1 | Symbols:  | Thioesterase superfamily protein | chr...   177   1e-45
AT5G48950.1 | Symbols:  | Thioesterase superfamily protein | chr...   140   2e-34
AT5G48950.2 | Symbols:  | Thioesterase superfamily protein | chr...   126   5e-30

>AT1G48320.1 | Symbols:  | Thioesterase superfamily protein |
           chr1:17855024-17855577 REVERSE LENGTH=156
          Length = 156

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 94/109 (86%)

Query: 21  PLHAIGFEIEELSPQRVTGRLPITLKCCQPFKVLHGGVSAMIAESLASMGAHMASGYQRV 80
           PLH +GFE +ELSP R+TGRLP++  CCQPFKVLHGGVSA+IAESLASMGAHMASG++RV
Sbjct: 14  PLHMLGFEFDELSPTRITGRLPVSPVCCQPFKVLHGGVSALIAESLASMGAHMASGFKRV 73

Query: 81  AGIQLSINHLKRAELGDLVHAEATPLNVGKTVQVWEVTIWKIDPSNLQN 129
           AGIQLSINHLK A+LGDLV AEATP++ GKT+QVWEV +WK    +  N
Sbjct: 74  AGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTQKDKAN 122


>AT5G48950.1 | Symbols:  | Thioesterase superfamily protein |
           chr5:19846200-19847290 FORWARD LENGTH=157
          Length = 157

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 84/101 (83%)

Query: 21  PLHAIGFEIEELSPQRVTGRLPITLKCCQPFKVLHGGVSAMIAESLASMGAHMASGYQRV 80
           PL  +GF  +ELS  RV+G L +T KCCQPFKVLHGGVSA+IAE+LAS+GA +ASG++RV
Sbjct: 13  PLKILGFVFDELSATRVSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFKRV 72

Query: 81  AGIQLSINHLKRAELGDLVHAEATPLNVGKTVQVWEVTIWK 121
           AGI LSI+HL+ A LG++V AE+ P++VGK +QVWEV +WK
Sbjct: 73  AGIHLSIHHLRPAALGEIVFAESFPVSVGKNIQVWEVRLWK 113


>AT5G48950.2 | Symbols:  | Thioesterase superfamily protein |
           chr5:19846200-19847131 FORWARD LENGTH=127
          Length = 127

 Score =  126 bits (316), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 79/97 (81%)

Query: 21  PLHAIGFEIEELSPQRVTGRLPITLKCCQPFKVLHGGVSAMIAESLASMGAHMASGYQRV 80
           PL  +GF  +ELS  RV+G L +T KCCQPFKVLHGGVSA+IAE+LAS+GA +ASG++RV
Sbjct: 13  PLKILGFVFDELSATRVSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFKRV 72

Query: 81  AGIQLSINHLKRAELGDLVHAEATPLNVGKTVQVWEV 117
           AGI LSI+HL+ A LG++V AE+ P++VGK +Q  ++
Sbjct: 73  AGIHLSIHHLRPAALGEIVFAESFPVSVGKNIQTEDL 109