Miyakogusa Predicted Gene

Lj0g3v0065939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065939.1 Non Chatacterized Hit- tr|I3S7K3|I3S7K3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RIBOSOMAL_L15,Ribosomal protein L15, conserved site; 60S
RIBOSOMAL PROTEIN L27A,NULL; no description,CUFF.3083.1
         (148 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70600.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily...   223   3e-59
AT1G23290.1 | Symbols: RPL27A, RPL27AB | Ribosomal protein L18e/...   218   9e-58
AT1G12960.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily...   102   1e-22

>AT1G70600.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily
           protein | chr1:26621168-26621608 REVERSE LENGTH=146
          Length = 146

 Score =  223 bits (569), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 122/148 (82%), Gaps = 2/148 (1%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
           FHKLRN+F CPIVN++KLWSL+P++ K K+  +K   P++DVTQ+GFFKVLGKG LPEN+
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKS--TKDNVPLIDVTQHGFFKVLGKGHLPENK 118

Query: 121 PLVVXXXXXXXXXXXXXXXXGGAVLLTA 148
           P VV                GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>AT1G23290.1 | Symbols: RPL27A, RPL27AB | Ribosomal protein L18e/L15
           superfamily protein | chr1:8263007-8263447 FORWARD
           LENGTH=146
          Length = 146

 Score =  218 bits (556), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 107/148 (72%), Positives = 119/148 (80%), Gaps = 2/148 (1%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
           FHKLRN+F CPIVN++KLWSL+P++ K K+  SK   P++DVTQ+GFFKVLGKG LPEN+
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKS--SKDNVPLIDVTQHGFFKVLGKGHLPENK 118

Query: 121 PLVVXXXXXXXXXXXXXXXXGGAVLLTA 148
           P VV                GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>AT1G12960.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily
           protein | chr1:4422707-4423155 REVERSE LENGTH=104
          Length = 104

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 71/147 (48%), Gaps = 47/147 (31%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 41

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
           FHKLRN+F+C IVN++KLWS+                            VLGKG LPEN+
Sbjct: 42  FHKLRNKFYCQIVNLDKLWSM----------------------------VLGKGFLPENK 73

Query: 121 PLVVXXXXXXXXXXXXXXXXGGAVLLT 147
           P+VV                G AV+LT
Sbjct: 74  PVVVKAKLVSNTDEKKIKEAGSAVVLT 100