Miyakogusa Predicted Gene

Lj0g3v0065789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065789.1 Non Chatacterized Hit- tr|I1NK96|I1NK96_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1,41.6,1e-18,INNER
MEMBRANE ALBINO3-LIKE PROTEIN 1, 2, CHLOROPLAST,NULL; OXA1,Membrane
insertase OXA1/ALB3/YidC; ,CUFF.3069.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24490.2 | Symbols: ALB4, ARTEMIS | OxaA/YidC-like membrane i...   139   2e-33
AT1G24490.1 | Symbols: ALB4, ARTEMIS | OxaA/YidC-like membrane i...   139   2e-33
AT2G28800.4 | Symbols: ALB3 | 63 kDa inner membrane family prote...    96   2e-20
AT2G28800.1 | Symbols: ALB3 | 63 kDa inner membrane family prote...    96   2e-20
AT2G28800.3 | Symbols: ALB3 | 63 kDa inner membrane family prote...    60   1e-09
AT2G28800.2 | Symbols: ALB3 | 63 kDa inner membrane family prote...    60   1e-09

>AT1G24490.2 | Symbols: ALB4, ARTEMIS | OxaA/YidC-like membrane
           insertion protein | chr1:8682364-8684966 FORWARD
           LENGTH=462
          Length = 462

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 89/121 (73%), Gaps = 4/121 (3%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVFLQKSGGA 60
           MQSSQ+NDP MK+SQA+T  LPLMIGYFALSVPSGLSLYWLTNNILSTAQQV+LQK GGA
Sbjct: 246 MQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGA 305

Query: 61  KNPVSPVQDDIMKDNLT-QIPKPLSK-LSSTKVEDATQARQ--GEKSTSEGPQRGEKFRQ 116
           KNPV    + + K++ T QI K  S+ L    V +    R+  GEK T E P+ GE+FR 
Sbjct: 306 KNPVEKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRL 365

Query: 117 I 117
           +
Sbjct: 366 L 366


>AT1G24490.1 | Symbols: ALB4, ARTEMIS | OxaA/YidC-like membrane
           insertion protein | chr1:8682364-8684966 FORWARD
           LENGTH=499
          Length = 499

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 89/121 (73%), Gaps = 4/121 (3%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVFLQKSGGA 60
           MQSSQ+NDP MK+SQA+T  LPLMIGYFALSVPSGLSLYWLTNNILSTAQQV+LQK GGA
Sbjct: 283 MQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGA 342

Query: 61  KNPVSPVQDDIMKDNLT-QIPKPLSK-LSSTKVEDATQARQ--GEKSTSEGPQRGEKFRQ 116
           KNPV    + + K++ T QI K  S+ L    V +    R+  GEK T E P+ GE+FR 
Sbjct: 343 KNPVEKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRL 402

Query: 117 I 117
           +
Sbjct: 403 L 403


>AT2G28800.4 | Symbols: ALB3 | 63 kDa inner membrane family protein
           | chr2:12356669-12359158 REVERSE LENGTH=432
          Length = 432

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 23/117 (19%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVFLQKSGGA 60
           M+  Q +DP  K +  +  FLPLMIGYFALSVPSGLS+YWLTNN+LSTAQQV+L+K GGA
Sbjct: 269 MKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGA 328

Query: 61  KNPVSPVQDDIMKDNLTQIPKPLSKLSSTKVEDATQARQGEKSTSEGPQRGEKFRQI 117
           K    P  D+                +++K+  A +A+   +S ++    GE+FRQ+
Sbjct: 329 K----PNMDE----------------NASKIISAGRAK---RSIAQPDDAGERFRQL 362


>AT2G28800.1 | Symbols: ALB3 | 63 kDa inner membrane family protein
           | chr2:12356669-12359158 REVERSE LENGTH=462
          Length = 462

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 23/117 (19%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVFLQKSGGA 60
           M+  Q +DP  K +  +  FLPLMIGYFALSVPSGLS+YWLTNN+LSTAQQV+L+K GGA
Sbjct: 299 MKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGA 358

Query: 61  KNPVSPVQDDIMKDNLTQIPKPLSKLSSTKVEDATQARQGEKSTSEGPQRGEKFRQI 117
           K    P  D+                +++K+  A +A+   +S ++    GE+FRQ+
Sbjct: 359 K----PNMDE----------------NASKIISAGRAK---RSIAQPDDAGERFRQL 392


>AT2G28800.3 | Symbols: ALB3 | 63 kDa inner membrane family protein
           | chr2:12357133-12359158 REVERSE LENGTH=342
          Length = 342

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTN 43
           M+  Q +DP  K +  +  FLPLMIGYFALSVPSGLS+YWL +
Sbjct: 299 MKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLAH 341


>AT2G28800.2 | Symbols: ALB3 | 63 kDa inner membrane family protein
           | chr2:12357419-12359158 REVERSE LENGTH=348
          Length = 348

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTN 43
           M+  Q +DP  K +  +  FLPLMIGYFALSVPSGLS+YWL +
Sbjct: 299 MKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLVS 341