Miyakogusa Predicted Gene
- Lj0g3v0065659.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0065659.1 Non Chatacterized Hit- tr|B8BBH4|B8BBH4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,32.46,0.0000001,Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat, cysteine-containing subtype;
RNI-l,gene.g4725.t1.1
(252 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:27... 172 2e-43
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:27... 165 4e-41
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:27... 157 9e-39
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:27... 151 4e-37
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:27... 137 1e-32
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:16... 126 2e-29
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21... 125 2e-29
AT5G52480.2 | Symbols: | RNI-like superfamily protein | chr5:21... 105 4e-23
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 91 7e-19
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 91 8e-19
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 91 8e-19
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 91 8e-19
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 91 8e-19
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 91 8e-19
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14... 81 8e-16
AT3G48880.2 | Symbols: | RNI-like superfamily protein | chr3:18... 65 3e-11
AT3G48880.1 | Symbols: | RNI-like superfamily protein | chr3:18... 65 3e-11
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 54 7e-08
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 54 1e-07
AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 51 6e-07
AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:72... 49 3e-06
>AT4G05460.1 | Symbols: | RNI-like superfamily protein |
chr4:2761106-2762400 REVERSE LENGTH=302
Length = 302
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 10 KGPNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGY---S 66
+ NW LP E+ IL RL +EI+ A VC W +CKDP +WR I + + G
Sbjct: 15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74
Query: 67 FYNSVDICSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMM 126
YN +C +A+ RS G L DI I T DLL IA+ +S LR L +I C +I+D G +
Sbjct: 75 DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134
Query: 127 EAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSSSSDDNVAFAIAR 186
EAV K PL EEL++SY S + +SL +G+CC +KTLK N+ +D+ A AIA
Sbjct: 135 EAVVKLPL-EELELSYCS-FSVESLRVVGQCCLNMKTLKLNK---HPQKENDDDALAIAE 189
Query: 187 TMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKKCREQIKHLLL 246
TMP LR+LQ+ N +S+ GL AIL+ C LE LDLR C ++L G L K+C E +K +
Sbjct: 190 TMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRH 249
Query: 247 PT 248
P
Sbjct: 250 PN 251
>AT4G05497.1 | Symbols: | RNI-like superfamily protein |
chr4:2777903-2778801 REVERSE LENGTH=246
Length = 246
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 131/229 (57%), Gaps = 8/229 (3%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISI------THPGYS 66
NW LP E+ +IL RL +EI+ A VC W +C+DP +WR I I +
Sbjct: 20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79
Query: 67 FYNSVDICSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMM 126
FY +C A+ S G L +I+ID + L IA+ +S LRRL ++DC + RG++
Sbjct: 80 FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139
Query: 127 EAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSSSSDDNVAFAIAR 186
EA K PLLEELDI+Y S++ + L+ +G+ CP L+TLK N D VA AIA
Sbjct: 140 EAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTG--DVKCCDKVALAIAE 197
Query: 187 TMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGK 235
TMP LR+LQ+ N +S GL AIL GCP L+ L L C +++ G + K
Sbjct: 198 TMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246
>AT4G05475.1 | Symbols: | RNI-like superfamily protein |
chr4:2765962-2767957 REVERSE LENGTH=309
Length = 309
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 143/247 (57%), Gaps = 14/247 (5%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
NW+ LP E+ +IL RL V +I+ A +C W ICKDP +WR I++ ++
Sbjct: 39 NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCLMYEFDFES 98
Query: 73 ICSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAVKKF 132
+C + + S G L +I+I+ +D LL I + + L+ L I + ++++G+M ++K
Sbjct: 99 MCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKL 158
Query: 133 PLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFN-----------QINYWSSSSDDNVA 181
PLLE L I +SS K L+ IG CP LKTLK N Q+ Y D+ A
Sbjct: 159 PLLETLVIFHSS--IKLDLKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDA 216
Query: 182 FAIARTMPALRYLQIIDNTISNVGLLAILNGCPLL-EFLDLRCCEFLDLSGSLGKKCREQ 240
AIA +MP LR+LQ++ N ++N GL AIL+GCP L E LD+R C ++L G+L K+C ++
Sbjct: 217 LAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKR 276
Query: 241 IKHLLLP 247
IK L P
Sbjct: 277 IKELRRP 283
>AT4G05470.1 | Symbols: | RNI-like superfamily protein |
chr4:2763256-2765351 REVERSE LENGTH=304
Length = 304
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 21/252 (8%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
NW+ LP E+ +IL RL + +I+ A VC W ICKDP +WR I+ ++ V
Sbjct: 45 NWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRDCLMYNFDFVS 104
Query: 73 ICSYAIRRSYGHLEDISIDS-IATDDLLMDIANSTSILRRLCIIDC-DRISDRGMMEAVK 130
+C + + S G L +I++D +D LL I + LR L + C R++ G++ A+
Sbjct: 105 MCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRN--LRSLGLGMCFPRVTKLGVVNAIA 162
Query: 131 KFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSSSSD------------- 177
K PLLE L++++S K L+ IG CP LKTLK N + +SD
Sbjct: 163 KIPLLETLEVTHSC--IKLDLKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPL 220
Query: 178 --DNVAFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGK 235
D+ A AIA +MP L +LQ++ N ++N GL AIL+GCP LE LD+R C + L G+L K
Sbjct: 221 ECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNLEK 280
Query: 236 KCREQIKHLLLP 247
+C E IK L P
Sbjct: 281 RCLEMIKELRRP 292
>AT4G05490.1 | Symbols: | RNI-like superfamily protein |
chr4:2771044-2772252 REVERSE LENGTH=307
Length = 307
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 143/244 (58%), Gaps = 9/244 (3%)
Query: 10 KGPNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPG--YSF 67
K NW LP +++ +IL RL +EI+ A VC W + KDPLIWR I + + Y
Sbjct: 23 KPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI 82
Query: 68 YNSVDICSYAIRRSYGHLEDISIDS--IATDDLLMDIANSTSILRRLCIIDCDRISDRGM 125
Y C + + S G L + +ID T LL +A +S LRRL + +I+ G+
Sbjct: 83 YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRL-RVKGGQITSVGI 141
Query: 126 MEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSS-SSDDNVAFAI 184
EA+ K PLLEEL++ Y S + ++ + IG+ CP LKTLK + +WS + DN A AI
Sbjct: 142 FEAIVKLPLLEELELLYCS-IEEEHFKTIGQACPNLKTLKL--VGFWSHLNESDNDALAI 198
Query: 185 ARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKKCREQIKHL 244
A TMP L +LQ+I N ++N+GL AIL+GCP LE LDLR C ++L G L ++C E+IK
Sbjct: 199 ADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKDF 258
Query: 245 LLPT 248
P
Sbjct: 259 RCPN 262
>AT4G03630.1 | Symbols: | RNI-like superfamily protein |
chr4:1608750-1610037 FORWARD LENGTH=220
Length = 220
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 76 YAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAVKKFPLL 135
+A+ S G +I+I+ TD LL IA+ +S LR L + CD+I+ G+ K PLL
Sbjct: 31 HAVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEAMKLPLL 90
Query: 136 EELDISYSSNLTKDSLEEIGRCCPFLKTLKFN-QINYWSSSSDDNVAFAIARTMPALRYL 194
E+L++SY + +LE IG C LKTLK N Q + + D+ A IA+ MP LR L
Sbjct: 91 EDLELSYCL-IKGKNLEAIGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRMPELRCL 149
Query: 195 QIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKKCREQIKHLLLPT 248
Q+ N +S+VGL AI +GCP LE LDLR C ++L G L K+C E+IK L P
Sbjct: 150 QLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCMERIKDLRRPN 203
>AT5G52480.1 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297762 REVERSE LENGTH=241
Length = 241
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 69 NSVDICSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEA 128
N IC A+ RS G L +I+I +D LL IA +S LR L ++ C I+D G ++A
Sbjct: 14 NPEAICRNAVDRSEGGLLEINIGDFGSDSLLTYIAERSSNLRSLRLM-CSEITDDGFVQA 72
Query: 129 VKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSSSSDDNVAFAIARTM 188
V K P+LEEL++S S L+ +S++ G CP LKTL N++ Y SS DD+ A AIA +M
Sbjct: 73 VVKLPMLEELEVSGIS-LSGESMKLAGLSCPNLKTLMLNRLFYLSSDDDDHDAIAIAESM 131
Query: 189 PALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKKCREQIKHL 244
P LR+LQ+ N ++ GL AIL+GCP LE LDLR C ++L G+L K+C E+IK L
Sbjct: 132 PKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGNLEKRCFEKIKDL 185
>AT5G52480.2 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297529 REVERSE LENGTH=203
Length = 203
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 98/148 (66%), Gaps = 4/148 (2%)
Query: 97 DLLMDIANSTSILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGR 156
+ L I +S LR L ++ C I+D G ++AV K P+LEEL++S S L+ +S++ G
Sbjct: 4 NFLHTITCRSSNLRSLRLM-CSEITDDGFVQAVVKLPMLEELEVSGIS-LSGESMKLAGL 61
Query: 157 CCPFLKTLKFNQINYWSSSSDDNVAFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLL 216
CP LKTL N++ Y SS DD+ A AIA +MP LR+LQ+ N ++ GL AIL+GCP L
Sbjct: 62 SCPNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHL 121
Query: 217 EFLDLRCCEFLDLSGSLGKKCREQIKHL 244
E LDLR C ++L G+L K+C E+IK L
Sbjct: 122 EHLDLRQC--INLVGNLEKRCFEKIKDL 147
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 112/244 (45%), Gaps = 29/244 (11%)
Query: 11 GPNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISI-----THPGY 65
G +W L E++ NI+ RL + E+ T V W +C+DP +W + ++P
Sbjct: 5 GSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPES 64
Query: 66 S------FYNSVDIC-SYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCD 118
+ F VD+ + S G L I + +D L A+ L+ L I
Sbjct: 65 THLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRH-CSDHALSYAADRCPNLQVLAIRSSP 123
Query: 119 RISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSS---- 174
++D M + + L+ELDISY ++ D+L IGR CP L+ LK N ++ WSS
Sbjct: 124 NVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMD-WSSRHIG 182
Query: 175 -----------SSDDNVAFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRC 223
D A AI + M L +L+I + +S GL +I GCP LE+LDL
Sbjct: 183 SVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFG 242
Query: 224 CEFL 227
C L
Sbjct: 243 CVHL 246
>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 6/229 (2%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
+W L + + I L + E++T VC W P W+ I I F+ S
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 73 I---CSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAV 129
+ I RS G L +S+ + D + IA L+ L + +++ G++
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSG-LTNSGVVNVA 127
Query: 130 KKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTL--KFNQINYWSSSSDDNVAFAIART 187
+K L LD+SY + ++++ IG+ C L+ + ++ S S D+ A+AIA T
Sbjct: 128 EKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANT 187
Query: 188 MPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKK 236
MP L+ L+I + +S G+L IL+ C LEFL+LR C + L K+
Sbjct: 188 MPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKE 236
>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 6/229 (2%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
+W L + + I L + E++T VC W P W+ I I F+ S
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 73 I---CSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAV 129
+ I RS G L +S+ + D + IA L+ L + +++ G++
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSG-LTNSGVVNVA 127
Query: 130 KKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTL--KFNQINYWSSSSDDNVAFAIART 187
+K L LD+SY + ++++ IG+ C L+ + ++ S S D+ A+AIA T
Sbjct: 128 EKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANT 187
Query: 188 MPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKK 236
MP L+ L+I + +S G+L IL+ C LEFL+LR C + L K+
Sbjct: 188 MPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKE 236
>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 6/229 (2%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
+W L + + I L + E++T VC W P W+ I I F+ S
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 73 I---CSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAV 129
+ I RS G L +S+ + D + IA L+ L + +++ G++
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSG-LTNSGVVNVA 127
Query: 130 KKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTL--KFNQINYWSSSSDDNVAFAIART 187
+K L LD+SY + ++++ IG+ C L+ + ++ S S D+ A+AIA T
Sbjct: 128 EKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANT 187
Query: 188 MPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKK 236
MP L+ L+I + +S G+L IL+ C LEFL+LR C + L K+
Sbjct: 188 MPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKE 236
>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 6/229 (2%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
+W L + + I L + E++T VC W P W+ I I F+ S
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 73 I---CSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAV 129
+ I RS G L +S+ + D + IA L+ L + +++ G++
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSG-LTNSGVVNVA 127
Query: 130 KKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTL--KFNQINYWSSSSDDNVAFAIART 187
+K L LD+SY + ++++ IG+ C L+ + ++ S S D+ A+AIA T
Sbjct: 128 EKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANT 187
Query: 188 MPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKK 236
MP L+ L+I + +S G+L IL+ C LEFL+LR C + L K+
Sbjct: 188 MPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKE 236
>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 6/229 (2%)
Query: 13 NWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVD 72
+W L + + I L + E++T VC W P W+ I I F+ S
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 73 I---CSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAV 129
+ I RS G L +S+ + D + IA L+ L + +++ G++
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSG-LTNSGVVNVA 127
Query: 130 KKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTL--KFNQINYWSSSSDDNVAFAIART 187
+K L LD+SY + ++++ IG+ C L+ + ++ S S D+ A+AIA T
Sbjct: 128 EKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANT 187
Query: 188 MPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKK 236
MP L+ L+I + +S G+L IL+ C LEFL+LR C + L K+
Sbjct: 188 MPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKE 236
>AT4G30640.1 | Symbols: | RNI-like superfamily protein |
chr4:14952670-14953682 FORWARD LENGTH=301
Length = 301
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 102/241 (42%), Gaps = 29/241 (12%)
Query: 12 PNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSV 71
P+W L RE + +I RL + LV W N C DP + + SF S+
Sbjct: 18 PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFPESI 77
Query: 72 D------------ICSYAIRRSYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDR 119
+ + RS G L +I I T+ L A L L I +C
Sbjct: 78 NWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRH-CTERSLSYAAERCPNLEVLWIKNCPN 136
Query: 120 ISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSSSSDDN 179
++D M + P L ELDISYS +T +SL +GR C LK LK N + S
Sbjct: 137 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 196
Query: 180 V----------------AFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRC 223
V A I + M L++L+I +T++ GL ++ GC LE++DLR
Sbjct: 197 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 256
Query: 224 C 224
C
Sbjct: 257 C 257
>AT3G48880.2 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 5 EGVSRKGPNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPG 64
E SR+ W L +++ I Q+ V E+ + + VC W C DP++W+T+ +++
Sbjct: 4 EYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMR 63
Query: 65 YSFYN-SVDICSYAIRRSYGHLEDI-----------------SIDSIATDDLLMDIANST 106
SF ++ Y RRS L I + +DD L A
Sbjct: 64 SSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERC 123
Query: 107 SILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKF 166
LRR+ + +RI G+ +A++ + LE L + +N L EI + C K LK
Sbjct: 124 PGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIAN-PPYLLTEIAKNCKNFKELKI 182
Query: 167 NQINYWSSSSDDNVAFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEF 226
+ A + +P ++ L I + I L+ IL+G P LE L++
Sbjct: 183 ------MGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHL 236
Query: 227 LDLSG 231
++ SG
Sbjct: 237 VEYSG 241
>AT3G48880.1 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 5 EGVSRKGPNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPG 64
E SR+ W L +++ I Q+ V E+ + + VC W C DP++W+T+ +++
Sbjct: 4 EYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMR 63
Query: 65 YSFYN-SVDICSYAIRRSYGHLEDI-----------------SIDSIATDDLLMDIANST 106
SF ++ Y RRS L I + +DD L A
Sbjct: 64 SSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERC 123
Query: 107 SILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKF 166
LRR+ + +RI G+ +A++ + LE L + +N L EI + C K LK
Sbjct: 124 PGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIAN-PPYLLTEIAKNCKNFKELKI 182
Query: 167 NQINYWSSSSDDNVAFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEF 226
+ A + +P ++ L I + I L+ IL+G P LE L++
Sbjct: 183 ------MGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHL 236
Query: 227 LDLSG 231
++ SG
Sbjct: 237 VEYSG 241
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 91 DSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDS 150
D +D ++ + S L+RL + C ISD+G+ K L ELD+ + D
Sbjct: 412 DCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDG 471
Query: 151 LEEIGRCCPFLKTLKFNQINYWSSSSDDNVAFAIARTMPALRYLQIID-NTISNVGLLAI 209
L + R C L L ++Y +D V R + L +L++ I+ VGL AI
Sbjct: 472 LAALSRGCKSLNRL---ILSYCCELTDTGVEQI--RQLELLSHLELRGLKNITGVGLAAI 526
Query: 210 LNGCPLLEFLDLRCCEFLDLSG 231
+GC L +LD++ CE +D SG
Sbjct: 527 ASGCKKLGYLDVKLCENIDDSG 548
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
Query: 65 YSFYNSVDICSYAIRRSYGHLEDISIDS--IATDDLLMDIANSTSILRRLCIIDCDRISD 122
YSF + D AI + L+D+++ + L IA+ L R+ I C I
Sbjct: 302 YSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGT 361
Query: 123 RGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLKFNQINYWSSSSDDNVAF 182
RG+ K P L+EL + Y + +L+EIG+ C L+ L S D
Sbjct: 362 RGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVD----CSGIGDIAMC 417
Query: 183 AIARTMPALRYLQIID-NTISNVGLLAILNGCPLLEFLDLRCCEFLDLSG--SLGKKCRE 239
+IA+ L+ L I I N G+++I C L L LR C+ + ++GK C
Sbjct: 418 SIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCSL 477
Query: 240 Q 240
Q
Sbjct: 478 Q 478
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 90 IDSIATDDLLM-DIANSTSILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTK 148
+D D+ M IA L++L I C I ++G++ K L EL + + +
Sbjct: 406 VDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGN 465
Query: 149 DSLEEIGRCCPFLKTLKFNQINYWSSSSDDNVAFAIARTMPALRYLQI-IDNTISNVGLL 207
+L IG+ C L+ L + N S D AIAR P L +L I + I ++ L
Sbjct: 466 KALIAIGKGCS-LQQLNVSGCNQIS----DAGITAIARGCPQLTHLDISVLQNIGDMPLA 520
Query: 208 AILNGCPLLEFLDLRCCEFLDLSG--SLGKKCR 238
+ GCP+L+ L L C + +G L +KC+
Sbjct: 521 ELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCK 553
>AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNI-like superfamily protein (TAIR:AT4G05470.1); Has
118 Blast hits to 113 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:1612035-1612613 FORWARD LENGTH=88
Length = 88
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 93 IATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDSLE 152
D L IA +S LR L + C ++ G + AV K LEELDI S T+ L+
Sbjct: 4 FGNDSLYSYIAQRSSNLRCLRLAMCYPLTGNGFVSAVMKLSFLEELDI--SQGYTQLDLK 61
Query: 153 EIGRCCPFLKTLKFNQINY 171
IG CP LKT K N+ ++
Sbjct: 62 AIGHSCPLLKTFKLNRPSF 80
>AT5G21900.1 | Symbols: | RNI-like superfamily protein |
chr5:7238239-7240338 FORWARD LENGTH=544
Length = 544
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 106 TSILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPFLKTLK 165
+SIL L + +C+ ++D M + LE LDI+ LT SLE I C +LK+LK
Sbjct: 361 SSILTDLSLANCNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRYLKSLK 420
Query: 166 FNQINYWSSSSDDNVAFAIARTMPALRYLQIIDNTISNVG---LLAILNGCPLLEFLDLR 222
+ SD+ +A + + +LR L + N + +VG ++ C +L+FLDL
Sbjct: 421 LTSNRF----SDECIAAFLEVSGGSLRELCL--NKVRDVGPETAFSLAKVCKMLQFLDLS 474
Query: 223 CCEFL 227
C L
Sbjct: 475 WCRRL 479