Miyakogusa Predicted Gene

Lj0g3v0065489.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065489.1 Non Chatacterized Hit- tr|D7LRV0|D7LRV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,46.74,0.0000000005,seg,NULL,CUFF.3039.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    54   3e-08

>AT3G60850.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 11 growth stages; Has 42
           Blast hits to 42 proteins in 12 species: Archae - 0;
           Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr3:22482053-22483999 FORWARD LENGTH=648
          Length = 648

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 26/33 (78%)

Query: 65  LFISPDPHISSQFYTFNPDSYTLMIRCRDPRRL 97
           LFISPDPHISSQFYTFN  S++LM RC    RL
Sbjct: 95  LFISPDPHISSQFYTFNAASHSLMCRCLREGRL 127