Miyakogusa Predicted Gene

Lj0g3v0065059.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065059.3 Non Chatacterized Hit- tr|I3SV15|I3SV15_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,99.12,0,UBIQUITIN
DOMAIN CONTAINING 1 PROTEIN-RELATED,NULL; seg,NULL,CUFF.3090.3
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53400.1 | Symbols:  | Ubiquitin domain-containing protein | ...   178   5e-46
AT5G45740.1 | Symbols:  | Ubiquitin domain-containing protein | ...   156   3e-39
AT1G16960.1 | Symbols:  | Ubiquitin domain-containing protein | ...   147   2e-36

>AT1G53400.1 | Symbols:  | Ubiquitin domain-containing protein |
           chr1:19925009-19926400 FORWARD LENGTH=114
          Length = 114

 Score =  178 bits (452), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 92/110 (83%)

Query: 1   MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDXXX 60
           MGCAGS+QS+ADG+ KKIRKPKPWKH QPIT+ +L++LR+EFWDTAPHYGGRKEIWD   
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  XXXXXXXXXXXXIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNL 110
                       IVDSAGVIVQ++DLTVCYDERGAKYELPKYVLSEPTNL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110


>AT5G45740.1 | Symbols:  | Ubiquitin domain-containing protein |
           chr5:18556975-18558097 REVERSE LENGTH=118
          Length = 118

 Score =  156 bits (394), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 88/116 (75%), Gaps = 2/116 (1%)

Query: 1   MGCAGSSQSKADG--TEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDX 58
           MGC GSSQ++ +G    KKI KPKPW H +PITR QL  +R+EFWDT+PHYGG++EIW+ 
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 59  XXXXXXXXXXXXXXIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRDD 114
                         IVDSAGVIVQ+ DLT+C+DERGA+YELP+YVLSEPTNLIR++
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIREE 116


>AT1G16960.1 | Symbols:  | Ubiquitin domain-containing protein |
           chr1:5799998-5800624 FORWARD LENGTH=114
          Length = 114

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 89/112 (79%), Gaps = 2/112 (1%)

Query: 1   MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDXXX 60
           MGC+ SS++ A+G ++KIR+PK WKHPQPI+R +L Q+R+EFWDTAPHYGG+KEIWD   
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 59

Query: 61  XXXXX-XXXXXXXIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLI 111
                        I++SAGVIVQ++DLT+CYDE+G+KYELPKYVL +P+NLI
Sbjct: 60  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111