Miyakogusa Predicted Gene

Lj0g3v0064829.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064829.1 tr|B9IGA5|B9IGA5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_825349 PE=4
SV=1,27.79,3e-17,VARLMGL,NULL; seg,NULL,CUFF.2994.1
         (432 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58630.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...    54   2e-07

>AT5G58630.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:23696141-23697335 REVERSE LENGTH=372
          Length = 372

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 31  TTNAGCLISIFRKILCSRGVPTQSSDQTRELRASNSMGSGKAQDLNAEAGAASTTTPGIV 90
           T + GC+  I ++ LCS    T  SD   E        S K++D   E        PG V
Sbjct: 19  TRSFGCISIILQRFLCSGTSSTYPSDLITE-------PSFKSRDFIPEPLRGRGDGPGAV 71

Query: 91  ARLMGLESIASSEMPCXXXXXXXXXXXXMNSMDQDYLGDCNGMQGLQKKVKSTLSFREVP 150
           ARLMGL+SI     P             +N + +D     + +QG  ++VKSTL + E  
Sbjct: 72  ARLMGLDSI-----PVIDKTRFLSRSHSVNHLKRDD----DEIQGKHRRVKSTLEYVE-- 120

Query: 151 TFLLIENEKFLVFSFE 166
               +E++ F + SFE
Sbjct: 121 ----LEDDDFFILSFE 132