Miyakogusa Predicted Gene

Lj0g3v0064269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064269.1 Non Chatacterized Hit- tr|B9RIY4|B9RIY4_RICCO
Mads box protein, putative OS=Ricinus communis
GN=RCOM,55.14,2e-16,coiled-coil,NULL; seg,NULL; K_BOX,Transcription
factor, K-box; K-box,Transcription factor, K-box,CUFF.2950.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23260.2 | Symbols: TT16, ABS, AGL32 | K-box region and MADS-...    64   2e-11
AT5G23260.1 | Symbols: TT16, ABS, AGL32 | K-box region and MADS-...    50   4e-07

>AT5G23260.2 | Symbols: TT16, ABS, AGL32 | K-box region and MADS-box
           transcription factor family protein  |
           chr5:7836442-7838340 FORWARD LENGTH=252
          Length = 252

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query: 8   ELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILEDQNSTLTNLIQEHRAMWEFQK 67
           EL  LE  LE+S+ KVR R+NEL+QQQ +NL RK R+LE+ N+ +   + EHRA  EFQ+
Sbjct: 122 ELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQ 181

Query: 68  AA 69
           A 
Sbjct: 182 AG 183


>AT5G23260.1 | Symbols: TT16, ABS, AGL32 | K-box region and MADS-box
           transcription factor family protein  |
           chr5:7836442-7838340 FORWARD LENGTH=247
          Length = 247

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 8   ELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILEDQNSTLTNLIQEHRAMWEFQK 67
           EL  LE  LE+S+ KVR R+     QQ +NL RK R+LE+ N+ +   + EHRA  EFQ+
Sbjct: 122 ELDGLERQLEHSVLKVRERK-----QQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQ 176

Query: 68  AA 69
           A 
Sbjct: 177 AG 178