Miyakogusa Predicted Gene

Lj0g3v0064039.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064039.1 Non Chatacterized Hit- tr|B9TBG0|B9TBG0_RICCO
Putative uncharacterized protein (Fragment)
OS=Ricinus,75,9e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.3015.1
         (457 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23230.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   659   0.0  
AT1G23230.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator c...   647   0.0  

>AT1G23230.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: response to salt stress; EXPRESSED IN: 24
           plant structures; EXPRESSED DURING: 15 growth stages;
           CONTAINS InterPro DOMAIN/s: Mediator complex subunit
           Med23 (InterPro:IPR021629). | chr1:8244481-8251741
           FORWARD LENGTH=1592
          Length = 1592

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/452 (70%), Positives = 368/452 (81%), Gaps = 10/452 (2%)

Query: 6   PASPLTSVHSIGSPAQPTIESLSYATLSPVKXXXXXXXXXXXKLRGSPSVRNNDISNSSL 65
           P S L S H IGSP+   ++S+        +            +R S  +R   ++  SL
Sbjct: 175 PTSLLPSAHGIGSPSASEVKSVENGQ----QIARAGQIVRENAMRNSQRIRAAAVN--SL 228

Query: 66  RQLCCKIILTGLEVSLKPVTYAEIFHHMLNWLVNWDQRQQGVDETDILKSWRPDKAVIAW 125
           RQL CKIIL G+E SLKPVT+AEIF +M+NWLVNWD+R  G +++ + KSWR +K +  W
Sbjct: 229 RQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDS-VGKSWRSEKTLAEW 287

Query: 126 LHSCLDVIWLLVDEGKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMMAMHMQ 185
           L SCLDVIWLLV+EG+ R+PFYELLRS LQFIENIPDDEALFTLI+EIHRRRD MAMHM 
Sbjct: 288 LRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHML 347

Query: 186 MLDQHLHCPTFGTHRILNQTTPNISGEAAAHLRLSPISYLSVLGEPLHAEDITNSIQKGS 245
           MLDQHLHCP+FGTHRI++Q T N+  EA  HLR SPI+Y SVLGEPL+ ED+  SI KGS
Sbjct: 348 MLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGS 407

Query: 246 LDWERAVRCIRHALRTTPSPDWWRRVLVLAPCYRPSSQA-PTAGAVFSSEMICEATIDRI 304
           LDWERAVRCIRHA+RTTPSPDWW+RVLV+APCYRPS+QA P  GAVF+S+MICEA IDRI
Sbjct: 408 LDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRI 467

Query: 305 VELLKLTNSEINCWQDWLVFSDIFYFLVKSGCIDFVDFVDKLVSRLTEGDQHILKTNHVT 364
           VELLKLTNS+ NCWQ+WLVFSDIF+FL+KSGC DFVDF+DKLV RL   D HIL+TNHVT
Sbjct: 468 VELLKLTNSDANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHILRTNHVT 527

Query: 365 WLLAQIIRIELVMNALNLDSRKVETTRKILSFHREDRSSDPNNPQSILLEFVSSCQNLRI 424
           WLLAQIIR+ELVM ALN D++KVETTRKILSFHREDR+SDPNNPQS+LL+FVSSCQNLRI
Sbjct: 528 WLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRI 587

Query: 425 WSLNTTAREYLNSEQLQKGKQIDEWWRQASKG 456
           WSL+TT R YLN+EQL KGKQIDEWWR  SKG
Sbjct: 588 WSLSTTTRAYLNNEQLLKGKQIDEWWR--SKG 617


>AT1G23230.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator
           complex subunit Med23 (InterPro:IPR021629); Has 187
           Blast hits to 184 proteins in 67 species: Archae - 0;
           Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr1:8244481-8251741 FORWARD LENGTH=1615
          Length = 1615

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/471 (67%), Positives = 368/471 (78%), Gaps = 29/471 (6%)

Query: 6   PASPLTSVHSIGSPAQPTIESLSYATLSPVKXXXXXXXXXXXKLRGSPSVRNNDISNSSL 65
           P S L S H IGSP+   ++S+        +            +R S  +R   ++  SL
Sbjct: 175 PTSLLPSAHGIGSPSASEVKSVENGQ----QIARAGQIVRENAMRNSQRIRAAAVN--SL 228

Query: 66  RQLCCKIILTGLEVSLKPVTYAEIFHHMLNWLVNWDQRQQGVDETDILKSWRPDKAVIAW 125
           RQL CKIIL G+E SLKPVT+AEIF +M+NWLVNWD+R  G +++ + KSWR +K +  W
Sbjct: 229 RQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDS-VGKSWRSEKTLAEW 287

Query: 126 LHSCLDVIWLLVDEGKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMMAMHMQ 185
           L SCLDVIWLLV+EG+ R+PFYELLRS LQFIENIPDDEALFTLI+EIHRRRD MAMHM 
Sbjct: 288 LRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHML 347

Query: 186 MLDQHLHCPTFGTHRILNQTTPNISGEAAAHLRLSPISYLSVLGEPLHAEDITNSIQKGS 245
           MLDQHLHCP+FGTHRI++Q T N+  EA  HLR SPI+Y SVLGEPL+ ED+  SI KGS
Sbjct: 348 MLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGS 407

Query: 246 LDWERAVRCIRHALRTTPSPDWWRRVLVLAPCYRPSSQA-PTAGAVFSSEMICEATIDRI 304
           LDWERAVRCIRHA+RTTPSPDWW+RVLV+APCYRPS+QA P  GAVF+S+MICEA IDRI
Sbjct: 408 LDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRI 467

Query: 305 VELLKLTNS-------------------EINCWQDWLVFSDIFYFLVKSGCIDFVDFVDK 345
           VELLKLTNS                   + NCWQ+WLVFSDIF+FL+KSGC DFVDF+DK
Sbjct: 468 VELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDK 527

Query: 346 LVSRLTEGDQHILKTNHVTWLLAQIIRIELVMNALNLDSRKVETTRKILSFHREDRSSDP 405
           LV RL   D HIL+TNHVTWLLAQIIR+ELVM ALN D++KVETTRKILSFHREDR+SDP
Sbjct: 528 LVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDP 587

Query: 406 NNPQSILLEFVSSCQNLRIWSLNTTAREYLNSEQLQKGKQIDEWWRQASKG 456
           NNPQS+LL+FVSSCQNLRIWSL+TT R YLN+EQL KGKQIDEWWR  SKG
Sbjct: 588 NNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKG 636