Miyakogusa Predicted Gene

Lj0g3v0063949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0063949.1 Non Chatacterized Hit- tr|C6TAG4|C6TAG4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,85.1,0,18S_RNA_Rcl1p: 18S rRNA biogenesis protein RCL1,RNA
3'-terminal phosphate cyclase type 2; RNA 3' TER,CUFF.2925.1
         (258 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22100.1 | Symbols:  | RNA cyclase family protein | chr5:7329...   333   6e-92

>AT5G22100.1 | Symbols:  | RNA cyclase family protein |
           chr5:7329015-7330718 FORWARD LENGTH=375
          Length = 375

 Score =  333 bits (855), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 172/249 (69%), Positives = 209/249 (83%), Gaps = 1/249 (0%)

Query: 7   KRLKGSQSFRQRLLLATLSSTPILIEDIRADETWPGLHSHEISLLRLFEMVCDDCHVEIN 66
           K++KGSQSFRQRLLL+TLSSTPI I++IRADET PGL  HE++LLRL E+V DD  V+IN
Sbjct: 5   KKMKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDIN 64

Query: 67  ETGTKLKYKPGTIMGGKQYHAHECGLSRSIGYFLEPLIVLGLFAKEPLTIKLKGITNDSK 126
           ETGT+LKYKPGTI+GGK    H C LSRSIGY+LEPL++LGLF K+PL+I+LKGITND +
Sbjct: 65  ETGTRLKYKPGTIVGGKNL-VHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITNDPR 123

Query: 127 DPSVDTFKSTAFPILKRFGVPSEGLDLKIESRGVPPNGGGEVTLSLPVVQSLMAVNWIDE 186
           D SVDTF+ST   I+KRFGVP+E L+LKIE+RGV PNGGGEV L++P +++L AV+W++E
Sbjct: 124 DASVDTFRSTTLNIIKRFGVPAEDLELKIEARGVAPNGGGEVLLTVPNIKTLSAVHWVEE 183

Query: 187 GFVKKIRGTTFSVRVSTQFENSMIKATRGIVNPLLSDVHLFSDHRSGPQAGNSPGYGISL 246
           G VKKIRGTTFS RV++ FE+SM  A RGI N LL DVH+F DHR+G QAG SPGYGISL
Sbjct: 184 GMVKKIRGTTFSTRVTSDFEHSMRFAARGIFNNLLPDVHIFQDHRAGAQAGKSPGYGISL 243

Query: 247 VAETTSGAL 255
            AETT+G  
Sbjct: 244 AAETTTGCF 252