Miyakogusa Predicted Gene

Lj0g3v0062939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062939.1 Non Chatacterized Hit- tr|I3S998|I3S998_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,53.77,2e-17,FBD,FBD; domain in FBox and BRCT domain containing
pl,FBD,CUFF.2839.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38580.1 | Symbols:  | FBD-like domain family protein | chr5:...    56   5e-09
AT5G38565.1 | Symbols:  | F-box/FBD-like domains containing prot...    54   2e-08
AT5G38570.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    53   5e-08
AT1G50980.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    51   1e-07
AT5G56420.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    50   2e-07
AT5G56420.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    50   2e-07
AT5G56325.1 | Symbols:  | FBD-like domain family protein | chr5:...    50   3e-07
AT1G51055.1 | Symbols:  | FBD-like domain family protein | chr1:...    48   1e-06
AT5G56380.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    48   1e-06
AT3G54910.3 | Symbols:  | RNI-like superfamily protein | chr3:20...    47   2e-06
AT3G54910.2 | Symbols:  | RNI-like superfamily protein | chr3:20...    47   2e-06
AT3G54910.1 | Symbols:  | RNI-like superfamily protein | chr3:20...    47   2e-06
AT1G78750.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    46   6e-06
AT4G10400.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    45   8e-06
AT4G10400.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    45   8e-06

>AT5G38580.1 | Symbols:  | FBD-like domain family protein |
           chr5:15451164-15451842 REVERSE LENGTH=168
          Length = 168

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPD---------PHIVPKCLTSRFSECSLKCCYGTASDLR 51
           +L + P L++L IS  +   + +         P+ VP+CL S          +G   D  
Sbjct: 55  LLKDSPNLRILDISVVKDHGTDERNGMVSWNQPNFVPECLLSSLQTLLWSRYFGRQQDRD 114

Query: 52  FAKYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
            A YI+ N+  L+T TI  ++        +M+KELAL  R S +C+L+F
Sbjct: 115 IAVYILKNACHLKTATILADTDEHDVPNLQMIKELALSLRTSVICQLVF 163


>AT5G38565.1 | Symbols:  | F-box/FBD-like domains containing protein
           | chr5:15444571-15446009 REVERSE LENGTH=349
          Length = 349

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 1   MLNNCPKLQVLAISSCQGSFS--------PDPHIVPKCLTSRFSECSLKCCYGTASDLRF 52
           +L + P L+VL I   QG  +          P  VP+CL       +L   +G   DL F
Sbjct: 236 LLKDSPNLRVLNIFKVQGHVTLSTGVDCWNQPISVPECLLESLQIFNLSHYFGKQQDLDF 295

Query: 53  AKYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCEL 98
             YI+ N+  L+T TI  +    P      LKEL L PR S+ C+L
Sbjct: 296 VVYILKNACHLKTATILAD---EPEHLVPNLKELTLSPRASSTCQL 338


>AT5G38570.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr5:15449279-15450601 REVERSE LENGTH=379
          Length = 379

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 1   MLNNCPKLQVLAISSCQGSF---SPDPHIVPKCLTSRFSECSLKCCYGTASDLRFAKYIM 57
           +L   P LQVL I   + +       P  V +CL S     +    +G   D   A YI+
Sbjct: 273 LLKGSPNLQVLDIFEMKRNDIVCWNQPSSVLECLLSSLKILNWSAYFGRPQDRDIAVYIL 332

Query: 58  HNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
            N+  L+T T   +  +   R+ +M+KEL L PR S+ C+L+F
Sbjct: 333 KNACHLKTATFLTDKRINDVRRLKMIKELRLSPRASSTCQLVF 375


>AT1G50980.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr1:18900541-18902057
           REVERSE LENGTH=370
          Length = 370

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 1   MLNNCPKLQVLA--------ISSCQGSFSPDPHIVPKCLTSRFSECSLKCCYGTASDLRF 52
           +LN  P+L+VL         +   +      P ++PK L+S       +    TA +   
Sbjct: 266 ILNYAPRLRVLQLKLYHKHCVKDTKNLMGNQPDLIPKSLSSHLEILEWRQYNDTAQEREA 325

Query: 53  AKYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRR 92
           AKYI+ N++ LR  T   ES+     KH MLKE+ +C +R
Sbjct: 326 AKYILANASGLRKATFYTEST----EKHGMLKEVRMCGQR 361


>AT5G56420.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22850863-22852334
           REVERSE LENGTH=422
          Length = 422

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPDPHI------VPKCLTSRFSECSLKCCYGTASDLRFAK 54
           ++ + PKL+VL +       +P P        +PKCL         +   G+      A 
Sbjct: 316 LIEDSPKLRVLKLRQKHIRRAPSPRASWKQPALPKCLLFHLETFKWELYEGSQKQKEVAT 375

Query: 55  YIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
           +I+ ++  L+T  I  + +     KHEMLK+L+  PR S+ CELLF
Sbjct: 376 FILKHAIRLKTAIISPKPTSTLLEKHEMLKDLSSSPRGSSTCELLF 421


>AT5G56420.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22850863-22852334
           REVERSE LENGTH=422
          Length = 422

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPDPHI------VPKCLTSRFSECSLKCCYGTASDLRFAK 54
           ++ + PKL+VL +       +P P        +PKCL         +   G+      A 
Sbjct: 316 LIEDSPKLRVLKLRQKHIRRAPSPRASWKQPALPKCLLFHLETFKWELYEGSQKQKEVAT 375

Query: 55  YIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
           +I+ ++  L+T  I  + +     KHEMLK+L+  PR S+ CELLF
Sbjct: 376 FILKHAIRLKTAIISPKPTSTLLEKHEMLKDLSSSPRGSSTCELLF 421


>AT5G56325.1 | Symbols:  | FBD-like domain family protein |
           chr5:22812213-22813193 FORWARD LENGTH=264
          Length = 264

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 1   MLNNCPKLQVLAISSCQG--SFSP-----DPHIVPKCLTSRFSECSLKCCYGTASDLRFA 53
           +L N P L+VL I        + P     +P  +P+CLT        +  YG   +   A
Sbjct: 157 LLRNSPSLRVLEIEQVHYLRYYQPRPCWSEPSSIPECLTHNLETFKWEHYYGAEEEKEVA 216

Query: 54  KYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
            +I+ +S  L+  TI    S+    K EM KEL+L P  S +C+L F
Sbjct: 217 AFILRSSICLKKATIILHRSIVHDEKLEMNKELSLLPICSPICQLAF 263


>AT1G51055.1 | Symbols:  | FBD-like domain family protein |
           chr1:18925286-18926315 REVERSE LENGTH=161
          Length = 161

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 1   MLNNCPKLQVLAIS-------SCQGSFSP--DPHIVPKCLTSRFSECSLKCCYGTASDLR 51
           +L++ PKL+VL +            S  P   P  VP CL+S       +   G   +  
Sbjct: 56  ILDDAPKLRVLKLKLYRKHCVEYNESMEPWKQPDYVPICLSSYLEIFEWRQYNGEEQERE 115

Query: 52  FAKYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
            AKYI+ N++ L+      ES+     KH +LKEL    R S  C+L+F
Sbjct: 116 VAKYILENASRLKKAIFYLESA----EKHGILKELECMARGSKKCQLVF 160


>AT5G56380.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22838836-22840353
           REVERSE LENGTH=439
          Length = 439

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPDPHI-----VPKCLTSRFSECSLKCCYGTASDLRFAKY 55
           +L + P LQ + I+ C    +P P       VP+CL+S           GT  +   + Y
Sbjct: 333 LLEDSPSLQDIKINQCHPVTNPRPQWNQPGSVPRCLSSSLETLEWVEYGGTHEEKELSTY 392

Query: 56  IMHNSTTLRTMTICCE-SSLRPPRKHEMLKELALCPRRSALCELLF 100
           +   +   +  +   + S     +K +ML+ELAL PR S  CEL+F
Sbjct: 393 LFKTAVCFKKASFTAKWSGGDANKKLQMLQELALSPRVSPTCELVF 438


>AT3G54910.3 | Symbols:  | RNI-like superfamily protein |
           chr3:20342967-20344277 REVERSE LENGTH=373
          Length = 373

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPD------PHIVPKCLTSRFSECSLKCCYGTASDLRFAK 54
           +L +   LQ L +S      + D      P  VP+C+       +L    GT  +   A 
Sbjct: 269 LLKDSSNLQALDLSEMDYHENHDILYWHQPSTVPECMLLSLQTLNLSAYRGTPEERDLAV 328

Query: 55  YIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
           Y + N+  L+T TI  +S +    + +MLKELAL  R S  C+L+F
Sbjct: 329 YFLKNAVHLKTTTI--KSCVFDDERFDMLKELALSSRASTTCQLVF 372


>AT3G54910.2 | Symbols:  | RNI-like superfamily protein |
           chr3:20342967-20344277 REVERSE LENGTH=373
          Length = 373

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPD------PHIVPKCLTSRFSECSLKCCYGTASDLRFAK 54
           +L +   LQ L +S      + D      P  VP+C+       +L    GT  +   A 
Sbjct: 269 LLKDSSNLQALDLSEMDYHENHDILYWHQPSTVPECMLLSLQTLNLSAYRGTPEERDLAV 328

Query: 55  YIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
           Y + N+  L+T TI  +S +    + +MLKELAL  R S  C+L+F
Sbjct: 329 YFLKNAVHLKTTTI--KSCVFDDERFDMLKELALSSRASTTCQLVF 372


>AT3G54910.1 | Symbols:  | RNI-like superfamily protein |
           chr3:20342967-20344277 REVERSE LENGTH=373
          Length = 373

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPD------PHIVPKCLTSRFSECSLKCCYGTASDLRFAK 54
           +L +   LQ L +S      + D      P  VP+C+       +L    GT  +   A 
Sbjct: 269 LLKDSSNLQALDLSEMDYHENHDILYWHQPSTVPECMLLSLQTLNLSAYRGTPEERDLAV 328

Query: 55  YIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
           Y + N+  L+T TI  +S +    + +MLKELAL  R S  C+L+F
Sbjct: 329 YFLKNAVHLKTTTI--KSCVFDDERFDMLKELALSSRASTTCQLVF 372


>AT1G78750.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:29613122-29614695 REVERSE LENGTH=458
          Length = 458

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 1   MLNNCPKLQVLAISSCQGSFSPDPHI--VPKCLTSRFSECSL-KCCYGTASDLRFAKYIM 57
            L +CP L+ L + S         +I  VP+   S      + +   G A +++   Y++
Sbjct: 356 FLESCPNLKSLVVGSANYREKEGINILSVPRGFLSSLEYVKIERPLKGEAMEMKLVSYLL 415

Query: 58  HNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELL 99
            NST L+ +T+C + S++   +  +LKEL   PR S+ C+++
Sbjct: 416 ENSTILKKLTLCLDDSIK-KEESVILKELNTIPRLSSACQVV 456


>AT4G10400.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr4:6446335-6447715
           REVERSE LENGTH=409
          Length = 409

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 1   MLNNCPKLQVLAISSCQ------GSFSPD-PHIVPKCLTSRFSECSLKCCYGTASDLRFA 53
            L N P L+ L + S        G  S + P IVP+C+ S   + +     G   D   A
Sbjct: 304 FLKNSPNLRELMLVSETDDHENLGMLSWNQPSIVPECMLSSLQKFTWFKYLGRPQDRDIA 363

Query: 54  KYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
            YI+ N+  LRT TI  +S  R   K EM+ EL L  + S+ CEL F
Sbjct: 364 VYILKNACRLRTATI--KSDTRLFTKLEMITELRLSSQASSTCELNF 408


>AT4G10400.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr4:6446335-6447715
           REVERSE LENGTH=409
          Length = 409

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 1   MLNNCPKLQVLAISSCQ------GSFSPD-PHIVPKCLTSRFSECSLKCCYGTASDLRFA 53
            L N P L+ L + S        G  S + P IVP+C+ S   + +     G   D   A
Sbjct: 304 FLKNSPNLRELMLVSETDDHENLGMLSWNQPSIVPECMLSSLQKFTWFKYLGRPQDRDIA 363

Query: 54  KYIMHNSTTLRTMTICCESSLRPPRKHEMLKELALCPRRSALCELLF 100
            YI+ N+  LRT TI  +S  R   K EM+ EL L  + S+ CEL F
Sbjct: 364 VYILKNACRLRTATI--KSDTRLFTKLEMITELRLSSQASSTCELNF 408