Miyakogusa Predicted Gene

Lj0g3v0062789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062789.1 Non Chatacterized Hit- tr|C5YXD0|C5YXD0_SORBI
Putative uncharacterized protein Sb09g018900
OS=Sorghu,43.7,0.000000000000001,CENTAURIN/ARF-RELATED,NULL;
CENTAURIN/ARF,NULL; seg,NULL,CUFF.2825.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07940.1 | Symbols:  | Calcium-dependent ARF-type GTPase acti...    83   4e-17

>AT3G07940.1 | Symbols:  | Calcium-dependent ARF-type GTPase
           activating protein family | chr3:2529542-2531368 FORWARD
           LENGTH=385
          Length = 385

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 65/122 (53%), Gaps = 16/122 (13%)

Query: 2   KKPKPHSSIEERSEFIRRKYELLQFMECGDNLSCQIVPSQGRSLTLAHSSSSCHHPP--M 59
           KKPKP S+ EER++FIR+KYE  QFM+          P  G   T    S +   PP   
Sbjct: 137 KKPKPDSTNEERNDFIRKKYEQHQFMD----------PKDGALCTYQQPSRTNTSPPSLC 186

Query: 60  DKKHYEKKPTKHHIGLTFRNSRGRXXXXXXXXXXXXXXLAGMVEFVGLIKVTVVKGKHLA 119
              H   + TK+ IG  FRNS GR              +AGMVEFVGLIKV VVKG +LA
Sbjct: 187 SASH---RSTKNRIGHAFRNSWGR-RESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLA 242

Query: 120 VR 121
           VR
Sbjct: 243 VR 244