Miyakogusa Predicted Gene

Lj0g3v0062389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062389.1 tr|K1PRA0|K1PRA0_CRAGI Non-structural maintenance
of chromosomes element 1-like protein
OS=Crassostr,25.7,3e-18,seg,NULL; SMC_Nse1,Nse1 non-SMC component of
SMC5-6 complex; zf-RING-like,Zinc finger, RING-like;
SU,NODE_74836_length_1395_cov_22.472401.path1.1
         (344 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21140.1 | Symbols: emb1379 | embryo defective 1379 | chr5:71...   316   1e-86

>AT5G21140.1 | Symbols: emb1379 | embryo defective 1379 |
           chr5:7187416-7189521 REVERSE LENGTH=312
          Length = 312

 Score =  316 bits (810), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/270 (57%), Positives = 194/270 (71%), Gaps = 6/270 (2%)

Query: 5   LNSRHHVVIQALLSRGPLKEKELHSMFEDITKRNPGADRKLFDAFILTINKALTCANFEL 64
           L+ +HH +IQAL+SRGPLKEKE HS+F  +T RNP   +K+FD ++L INK L+  +FEL
Sbjct: 4   LSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVHFEL 63

Query: 65  RGCIDQYDGQVYYGVVNTVSDEQSKLGTKYTVPQIAFYKAVIEAIVQDATANGYISSIGA 124
           + C DQYDGQV YGVVN V+D+QSKLGTKY+VPQIAF+K +IEAI QD  A G ISS  A
Sbjct: 64  KACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISSFDA 123

Query: 125 LNLNLDSQVTVATDPQSQGSQALVPPALKNFGLSQKEKALDELVRDRWLHLTTDGNIKLG 184
           LN+ L++Q++      +  SQ  VPPA KNF ++QKEK LDELVRD+WL  T + NI LG
Sbjct: 124 LNIRLENQISSE----ASSSQQQVPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGLG 179

Query: 185 VKSFLDLRSWFLNNEVPSCHVCNEAGIKAELCQNESCTVRIHHYCLKQLFSQRKAAKVCP 244
           ++S LDLRSWF NN+VPSC VCNEAG+KA+LC  E C VRIH YCLK+L SQR   K C 
Sbjct: 180 IRSLLDLRSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQRD-DKRCS 238

Query: 245 SCSTSWPYV-VPKAEALHIEEDNEPPQESQ 273
            C   WP   + K EA     ++E   E+Q
Sbjct: 239 GCGKPWPLSKITKTEAAEEAMNDEEESETQ 268