Miyakogusa Predicted Gene

Lj0g3v0062379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062379.1 Non Chatacterized Hit- tr|Q9ABB1|Q9ABB1_CAUCR
Putative uncharacterized protein OS=Caulobacter
cresce,35.42,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,NODE_73907_length_1174_cov_46.174618.path1.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21070.1 | Symbols:  | unknown protein; Has 115 Blast hits to...   352   2e-97

>AT5G21070.1 | Symbols:  | unknown protein; Has 115 Blast hits to
           115 proteins in 34 species: Archae - 1; Bacteria - 36;
           Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other
           Eukaryotes - 18 (source: NCBI BLink). |
           chr5:7156356-7157490 FORWARD LENGTH=225
          Length = 225

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/207 (85%), Positives = 183/207 (88%)

Query: 1   MDTLTAEDLPTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTALGAILHVIS 60
           MDT TAEDL TIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTA GA+LHVIS
Sbjct: 1   MDTFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVIS 60

Query: 61  TALLGITAVTMANTIVGEEAVHKLASLLLVFLGGSYVLLFLVGKGGHNHSHNQPMEKMAV 120
           T+LLGITA+TMANTI GEE VHKLASLLLVFLGGSYVLLFL GKGGH HSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAV 120

Query: 121 AGLILVPALSPCATTLPVFLAVGNSSTMMVLAIIVLLFSTITVMTSLVALSFYGASQLKF 180
           AGL+LVPALSPCATTLPVFLAVGNS +MMVLAIIVLLFSTI VMTSLVALSFYGASQLKF
Sbjct: 121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query: 181 HWVERYDKXXXXXXXXXXXXXXXIFHD 207
           HWVERYDK               +FHD
Sbjct: 181 HWVERYDKLLVGSVLCLVGILTLLFHD 207