Miyakogusa Predicted Gene

Lj0g3v0062259.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062259.2 Non Chatacterized Hit- tr|C0PFG6|C0PFG6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,59.65,2e-19,60S ACIDIC
RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein
60S; seg,NULL,CUFF.3017.2
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family | ...    84   2e-17
AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family | ...    82   1e-16
AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family | ...    82   1e-16
AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family | ...    82   1e-16
AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family | ...    77   3e-15
AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family | ...    77   3e-15
AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family | ...    77   3e-15
AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family | ...    71   1e-13
AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family | ...    68   1e-12
AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family | ...    65   7e-12
AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family | ...    65   1e-11

>AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=98
          Length = 98

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 53/64 (82%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AAY+LAVL G  SP++A+IK I+GSVG + +D +I   L E+KGKDLAE+IAAG+E
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KLAS 64
          KLAS
Sbjct: 61 KLAS 64


>AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AAY+LAVL G  SP++A+IK I+GSVG + +D +I   L E+KGKDLAE+IAAG+E
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AAY+LAVL G  SP++A+IK I+GSVG + +D +I   L E+KGKDLAE+IAAG+E
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AAY+LAVL G  SP++A+IK I+GSVG + +D +I   L E+KGKDLAE+IAAG+E
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11818696-11819370 FORWARD LENGTH=115
          Length = 115

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AA++LAVL G  SP+  +IK I+GSVG + +D +I   L E+KGKDLAE+IAAG+E
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV AA++LAVLGGN +PSA  IK IIG+VG D D + I   L E+ GKD+AE+IA+G+E
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KLAS 64
          KLAS
Sbjct: 61 KLAS 64


>AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV AA++LAVLGGN +PSA  IK IIG+VG D D + I   L E+ GKD+AE+IA+G+E
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KLAS 64
          KLAS
Sbjct: 61 KLAS 64


>AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:16029913-16030257 REVERSE LENGTH=114
          Length = 114

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 49/64 (76%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AAY+LA L GN +PS A++KKI+ SVG + D ++I  F S +K +D+ E+IA G+E
Sbjct: 1  MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61 KLAS 64
          K+A+
Sbjct: 61 KMAA 64


>AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11818696-11819370 FORWARD LENGTH=127
          Length = 127

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 12/74 (16%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGS------------VGGDADDDRIASFLSELKG 48
          MKV+AA++LAVL G  SP+  +IK I+GS            VG + +D +I   L E+KG
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIVGAETEDSQIELLLKEVKG 60

Query: 49 KDLAEVIAAGKEKL 62
          KDLAE+IAAG+EKL
Sbjct: 61 KDLAELIAAGREKL 74


>AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:10682204-10682551 FORWARD LENGTH=115
          Length = 115

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 49/64 (76%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKVIAA++LA LGGN +P++ ++KKI+ SVG + D+ +I    S +K  D+ E+IAAG+E
Sbjct: 1  MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61 KLAS 64
          K+++
Sbjct: 61 KMSA 64


>AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11818696-11819370 FORWARD LENGTH=130
          Length = 130

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 15/77 (19%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGS---------------VGGDADDDRIASFLSE 45
          MKV+AA++LAVL G  SP+  +IK I+GS                G + +D +I   L E
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 46 LKGKDLAEVIAAGKEKL 62
          +KGKDLAE+IAAG+EKL
Sbjct: 61 VKGKDLAELIAAGREKL 77