Miyakogusa Predicted Gene
- Lj0g3v0061899.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0061899.1 Non Chatacterized Hit- tr|Q00X15|Q00X15_OSTTA
Putative NPSN12 (ISS) OS=Ostreococcus tauri
GN=Ot13g01,51.14,2e-19,seg,NULL; Helical region found in SNAREs,Target
SNARE coiled-coil domain; no description,NULL; Sec20,CUFF.2773.1
(131 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant sn... 196 4e-51
AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |... 161 1e-40
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |... 161 1e-40
AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |... 109 4e-25
>AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare
11 | chr2:14831087-14832979 FORWARD LENGTH=265
Length = 265
Score = 196 bits (497), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/132 (71%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
Query: 1 MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
M+N++L D G+ MMD+TDQAIERGKK+V ET+NVGT+T+AALKAQTEQMSRVVNELDSIH
Sbjct: 134 MSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIH 193
Query: 61 FSIKKASKLVKEIGRQVATDKCIMAXXXXXXXXXXXXXXXXXXHPNNKDIRDIP--GLAP 118
FS+KKASKLVKEIGRQVATDKCIMA +PNNKDIRDIP GLAP
Sbjct: 194 FSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAP 253
Query: 119 PVMNRRLLWSHH 130
P MNRRLLW+H+
Sbjct: 254 PAMNRRLLWNHY 265
>AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
chr3:5969909-5972290 REVERSE LENGTH=269
Length = 269
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 94/127 (74%)
Query: 1 MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
M+N++L D G + MDETDQAIER K+VV +T+ VGT+TAA LK QT+QM RVVN LD+I
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195
Query: 61 FSIKKASKLVKEIGRQVATDKCIMAXXXXXXXXXXXXXXXXXXHPNNKDIRDIPGLAPPV 120
FSIKKAS+LVKEIGRQVATDKCIM +PNNKDIRDIPGLAPP
Sbjct: 196 FSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPA 255
Query: 121 MNRRLLW 127
+R+LL+
Sbjct: 256 QSRKLLY 262
>AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |
chr1:17809223-17811656 REVERSE LENGTH=265
Length = 265
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 96/127 (75%)
Query: 1 MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
M+N++L D G + MDETDQAIER K+VV +T+ VGT+TA+ LK QT+QM RVVN+LD+I
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQ 195
Query: 61 FSIKKASKLVKEIGRQVATDKCIMAXXXXXXXXXXXXXXXXXXHPNNKDIRDIPGLAPPV 120
FS+KKAS+LVKEIGRQVATDKCIMA +PNNKDIRDIPGLAPP
Sbjct: 196 FSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPA 255
Query: 121 MNRRLLW 127
+R+LL+
Sbjct: 256 QSRKLLY 262
>AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
chr3:5970153-5972290 REVERSE LENGTH=216
Length = 216
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 65/78 (83%)
Query: 1 MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
M+N++L D G + MDETDQAIER K+VV +T+ VGT+TAA LK QT+QM RVVN LD+I
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195
Query: 61 FSIKKASKLVKEIGRQVA 78
FSIKKAS+LVKEIGRQV
Sbjct: 196 FSIKKASQLVKEIGRQVC 213