Miyakogusa Predicted Gene

Lj0g3v0061899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0061899.1 Non Chatacterized Hit- tr|Q00X15|Q00X15_OSTTA
Putative NPSN12 (ISS) OS=Ostreococcus tauri
GN=Ot13g01,51.14,2e-19,seg,NULL; Helical region found in SNAREs,Target
SNARE coiled-coil domain; no description,NULL; Sec20,CUFF.2773.1
         (131 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant sn...   196   4e-51
AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   161   1e-40
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |...   161   1e-40
AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   109   4e-25

>AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare
           11 | chr2:14831087-14832979 FORWARD LENGTH=265
          Length = 265

 Score =  196 bits (497), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 107/132 (81%), Gaps = 2/132 (1%)

Query: 1   MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
           M+N++L D G+ MMD+TDQAIERGKK+V ET+NVGT+T+AALKAQTEQMSRVVNELDSIH
Sbjct: 134 MSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIH 193

Query: 61  FSIKKASKLVKEIGRQVATDKCIMAXXXXXXXXXXXXXXXXXXHPNNKDIRDIP--GLAP 118
           FS+KKASKLVKEIGRQVATDKCIMA                  +PNNKDIRDIP  GLAP
Sbjct: 194 FSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAP 253

Query: 119 PVMNRRLLWSHH 130
           P MNRRLLW+H+
Sbjct: 254 PAMNRRLLWNHY 265


>AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5969909-5972290 REVERSE LENGTH=269
          Length = 269

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 94/127 (74%)

Query: 1   MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
           M+N++L D G + MDETDQAIER K+VV +T+ VGT+TAA LK QT+QM RVVN LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195

Query: 61  FSIKKASKLVKEIGRQVATDKCIMAXXXXXXXXXXXXXXXXXXHPNNKDIRDIPGLAPPV 120
           FSIKKAS+LVKEIGRQVATDKCIM                   +PNNKDIRDIPGLAPP 
Sbjct: 196 FSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPA 255

Query: 121 MNRRLLW 127
            +R+LL+
Sbjct: 256 QSRKLLY 262


>AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |
           chr1:17809223-17811656 REVERSE LENGTH=265
          Length = 265

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 96/127 (75%)

Query: 1   MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
           M+N++L D G + MDETDQAIER K+VV +T+ VGT+TA+ LK QT+QM RVVN+LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQ 195

Query: 61  FSIKKASKLVKEIGRQVATDKCIMAXXXXXXXXXXXXXXXXXXHPNNKDIRDIPGLAPPV 120
           FS+KKAS+LVKEIGRQVATDKCIMA                  +PNNKDIRDIPGLAPP 
Sbjct: 196 FSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPA 255

Query: 121 MNRRLLW 127
            +R+LL+
Sbjct: 256 QSRKLLY 262


>AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5970153-5972290 REVERSE LENGTH=216
          Length = 216

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 65/78 (83%)

Query: 1   MTNEQLFDHGHQMMDETDQAIERGKKVVLETVNVGTETAAALKAQTEQMSRVVNELDSIH 60
           M+N++L D G + MDETDQAIER K+VV +T+ VGT+TAA LK QT+QM RVVN LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195

Query: 61  FSIKKASKLVKEIGRQVA 78
           FSIKKAS+LVKEIGRQV 
Sbjct: 196 FSIKKASQLVKEIGRQVC 213