Miyakogusa Predicted Gene

Lj0g3v0061139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0061139.1 Non Chatacterized Hit- tr|K4CMD6|K4CMD6_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,36.42,4e-18,coiled-coil,NULL; seg,NULL; MYB_LIKE,Myb-like
domain,CUFF.2714.1
         (316 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31270.1 | Symbols:  | sequence-specific DNA binding transcri...   130   1e-30

>AT4G31270.1 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr4:15183291-15184503 REVERSE
           LENGTH=294
          Length = 294

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 83/134 (61%), Gaps = 25/134 (18%)

Query: 27  GGRRTRSQVAPDWTVTESLILVNEIAAVEADCSAALSSYQQWEIIAGNCAALDIGRNLGQ 86
           G RRTRSQVAP+W V + L+LVNEIAAVEADCS ALSS+Q+W +I  NC ALD+ RNL Q
Sbjct: 7   GSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDVSRNLNQ 66

Query: 87  CRRKWYALLDEYHN--------RGG-----------------PLNLDPELFEAIQRVVKA 121
           CRRKW +L+ +Y+         RG                  P ++D ELFEAI  VV  
Sbjct: 67  CRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAINAVVMI 126

Query: 122 RQERHQVDPESDPE 135
           + E+   + +SDPE
Sbjct: 127 QDEKAGTESDSDPE 140