Miyakogusa Predicted Gene

Lj0g3v0060749.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060749.1 tr|C7QN35|C7QN35_CYAP0 Mini-ribonuclease 3
OS=Cyanothece sp. (strain PCC 8802) GN=mrnC PE=3
SV=1,43.1,1e-18,seg,NULL; Ribonuclease_3,Ribonuclease III domain;
RNase III domain-like,Ribonuclease III domain,CUFF.2709.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55140.1 | Symbols:  | Ribonuclease III family protein | chr1...   246   1e-65
AT3G13740.1 | Symbols:  | Ribonuclease III family protein | chr3...   245   2e-65
AT3G13740.2 | Symbols:  | Ribonuclease III family protein | chr3...   226   1e-59
AT1G55140.2 | Symbols:  | Ribonuclease III family protein | chr1...   169   1e-42

>AT1G55140.1 | Symbols:  | Ribonuclease III family protein |
           chr1:20572503-20574332 REVERSE LENGTH=237
          Length = 237

 Score =  246 bits (628), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 154/226 (68%), Gaps = 7/226 (3%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           +RA+ DTQ + R  YNPNAPR +KK N                        +SDLL+R  
Sbjct: 11  VRAALDTQPKLR--YNPNAPRNVKK-NSNLSSFVPPSSPSSSSPATNLSVSVSDLLKR-- 65

Query: 77  PLPTIAHVEKEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFLFP 136
             P    +    D++ +GYE+W P+PPKV KPRSVFNAA+LAYIGD IYE+YARRHFLFP
Sbjct: 66  --PASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYARRHFLFP 123

Query: 137 PLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGKNIXXXXXXXXXRAGA 196
           PLSIEEYNDRV AVVRCEAQ ALLQKL++ DFL+  ERD+LRWGKN+         RAG 
Sbjct: 124 PLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVGSVKTRSTRRAGV 183

Query: 197 AVYNRASSLETLVGYLYLTNVHRLEKLMVALGFSVDSSVPFNLEEA 242
           AVYN+ASSLETL+GYLYL+N  RLE++M  LGFS  SS    ++EA
Sbjct: 184 AVYNKASSLETLIGYLYLSNGKRLEEMMQKLGFSSGSSTERMVKEA 229


>AT3G13740.1 | Symbols:  | Ribonuclease III family protein |
           chr3:4504310-4505937 FORWARD LENGTH=247
          Length = 247

 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 156/226 (69%), Gaps = 10/226 (4%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           +RA+ DTQ   RLPYNPNAPRK+KK                          ++DLL+R  
Sbjct: 10  VRAALDTQ--PRLPYNPNAPRKVKKIPNGNSFLPPPSPAPSPGISIS----VADLLKR-- 61

Query: 77  PLPTIAHVEKEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFLFP 136
             P+   +  + D++Y+GYE W P+PPK+ KPRSVFN A+LA+IGD IYELYARRHFLFP
Sbjct: 62  --PSSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYARRHFLFP 119

Query: 137 PLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGKNIXXXXXXXXXRAGA 196
           PLSIE+YNDRV AVVRCEAQ ALL KL++ DFL+ +ERD+LRWGKN+         RAG 
Sbjct: 120 PLSIEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLGSARTRTRRRAGN 179

Query: 197 AVYNRASSLETLVGYLYLTNVHRLEKLMVALGFSVDSSVPFNLEEA 242
           AVYN+ASSLETL+GYLYLTN  RLEK+M  LGFS DSS    +EE 
Sbjct: 180 AVYNKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEET 225


>AT3G13740.2 | Symbols:  | Ribonuclease III family protein |
           chr3:4504310-4505937 FORWARD LENGTH=241
          Length = 241

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 150/226 (66%), Gaps = 16/226 (7%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           +RA+ DTQ   RLPYNPNAPRK+KK                          ++DLL+R  
Sbjct: 10  VRAALDTQ--PRLPYNPNAPRKVKKIPNGNSFLPPPSPAPSPGISIS----VADLLKR-- 61

Query: 77  PLPTIAHVEKEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFLFP 136
             P+   +  + D++Y+GYE W P+PPK+ KPRSVFN A+LA+IGD IYELYARRHFLFP
Sbjct: 62  --PSSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYARRHFLFP 119

Query: 137 PLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGKNIXXXXXXXXXRAGA 196
           PLSIE+YNDRV AV       ALL KL++ DFL+ +ERD+LRWGKN+         RAG 
Sbjct: 120 PLSIEDYNDRVRAVY------ALLNKLVDDDFLTKEERDILRWGKNLGSARTRTRRRAGN 173

Query: 197 AVYNRASSLETLVGYLYLTNVHRLEKLMVALGFSVDSSVPFNLEEA 242
           AVYN+ASSLETL+GYLYLTN  RLEK+M  LGFS DSS    +EE 
Sbjct: 174 AVYNKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEET 219


>AT1G55140.2 | Symbols:  | Ribonuclease III family protein |
           chr1:20572788-20574332 REVERSE LENGTH=170
          Length = 170

 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 109/165 (66%), Gaps = 7/165 (4%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           +RA+ DTQ + R  YNPNAPR +KK N                        +SDLL+R  
Sbjct: 11  VRAALDTQPKLR--YNPNAPRNVKK-NSNLSSFVPPSSPSSSSPATNLSVSVSDLLKR-- 65

Query: 77  PLPTIAHVEKEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFLFP 136
             P    +    D++ +GYE+W P+PPKV KPRSVFNAA+LAYIGD IYE+YARRHFLFP
Sbjct: 66  --PASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYARRHFLFP 123

Query: 137 PLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGK 181
           PLSIEEYNDRV AVVRCEAQ ALLQKL++ DFL+  ER +   G+
Sbjct: 124 PLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERSIYFGGE 168