Miyakogusa Predicted Gene

Lj0g3v0060729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060729.1 Non Chatacterized Hit- tr|I3SZR7|I3SZR7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.17,0,Coprogen_oxidas,Coproporphyrinogen III oxidase, aerobic;
no description,Coproporphyrinogen III oxida,CUFF.2703.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinogen...   471   e-133
AT4G03205.2 | Symbols: hemf2 | Coproporphyrinogen III oxidase | ...   164   5e-41
AT4G03205.1 | Symbols: hemf2 | Coproporphyrinogen III oxidase | ...   163   8e-41

>AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinogen
           III oxidase | chr1:869302-871175 REVERSE LENGTH=386
          Length = 386

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/241 (91%), Positives = 231/241 (95%), Gaps = 1/241 (0%)

Query: 1   MPPDAYRAAKGSA-DQKPGPVPFFAAGISSVLHPKNPHAPTLHFNYRYFETDAPKDAPGA 59
           MPP+AYRAAKGSA DQKPGPVPFFAAG+SSVLHPKNP APTLHFNYRYFETDAPKD PGA
Sbjct: 146 MPPEAYRAAKGSASDQKPGPVPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDVPGA 205

Query: 60  PRQWWFGGGTDLTPAYIFEEDVKHFHSTQKRACDKFDPTFYPRFKKWCDDYFYIKHRGER 119
           PRQWWFGGGTD TPAYIFEEDVKHFHS QK+ACDKFDP+FYPRFKKWCDDYFYIKHR ER
Sbjct: 206 PRQWWFGGGTDFTPAYIFEEDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDER 265

Query: 120 RGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDHQKAWQQLRRGR 179
           RGLGGIFFDDLNDYDQEMLLSFATECANSV+PAYIPI+EKRKD  FT+  KAWQQLRRGR
Sbjct: 266 RGLGGIFFDDLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGR 325

Query: 180 YVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACMNPKEW 239
           YVEFNLVYDRGTTFGLKTGGRIESILVSLPL+ARWEYDHKPEEG+EEWKLLDAC+NPKEW
Sbjct: 326 YVEFNLVYDRGTTFGLKTGGRIESILVSLPLSARWEYDHKPEEGTEEWKLLDACINPKEW 385

Query: 240 I 240
           I
Sbjct: 386 I 386


>AT4G03205.2 | Symbols: hemf2 | Coproporphyrinogen III oxidase |
           chr4:1412814-1413703 FORWARD LENGTH=240
          Length = 240

 Score =  164 bits (415), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 82/90 (91%), Gaps = 1/90 (1%)

Query: 1   MPPDAYRAAKG-SADQKPGPVPFFAAGISSVLHPKNPHAPTLHFNYRYFETDAPKDAPGA 59
           MPP+AYRAAK  +++QKPGP+PFFAAG SSVLHP+NP APTLHFNYRYFETDAPKD PGA
Sbjct: 146 MPPEAYRAAKAATSEQKPGPIPFFAAGTSSVLHPQNPFAPTLHFNYRYFETDAPKDVPGA 205

Query: 60  PRQWWFGGGTDLTPAYIFEEDVKHFHSTQK 89
           PRQWWFGGGTD TPAYIFEEDVKHFHS  K
Sbjct: 206 PRQWWFGGGTDFTPAYIFEEDVKHFHSVVK 235


>AT4G03205.1 | Symbols: hemf2 | Coproporphyrinogen III oxidase |
           chr4:1412814-1413765 FORWARD LENGTH=233
          Length = 233

 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)

Query: 1   MPPDAYRAAKG-SADQKPGPVPFFAAGISSVLHPKNPHAPTLHFNYRYFETDAPKDAPGA 59
           MPP+AYRAAK  +++QKPGP+PFFAAG SSVLHP+NP APTLHFNYRYFETDAPKD PGA
Sbjct: 146 MPPEAYRAAKAATSEQKPGPIPFFAAGTSSVLHPQNPFAPTLHFNYRYFETDAPKDVPGA 205

Query: 60  PRQWWFGGGTDLTPAYIFEEDVKHFHST 87
           PRQWWFGGGTD TPAYIFEEDVKHFHS 
Sbjct: 206 PRQWWFGGGTDFTPAYIFEEDVKHFHSV 233