Miyakogusa Predicted Gene

Lj0g3v0060379.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060379.3 Non Chatacterized Hit- tr|I1M1P3|I1M1P3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,63.64,0.000000009,seg,NULL,CUFF.2675.3
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29800.2 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...    50   3e-07
AT1G29800.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...    50   3e-07

>AT1G29800.2 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:10432736-10435046 FORWARD LENGTH=496
          Length = 496

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 26/36 (72%)

Query: 23  SPGAFVECSPEGSTVTTHTQENCCFYGSQSITATDI 58
           S GAFV CS EGS  TT T EN  FYGSQS+ A+DI
Sbjct: 434 SKGAFVGCSLEGSIFTTRTSENSRFYGSQSLAASDI 469


>AT1G29800.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:10432736-10435177 FORWARD LENGTH=510
          Length = 510

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 26/36 (72%)

Query: 23  SPGAFVECSPEGSTVTTHTQENCCFYGSQSITATDI 58
           S GAFV CS EGS  TT T EN  FYGSQS+ A+DI
Sbjct: 434 SKGAFVGCSLEGSIFTTRTSENSRFYGSQSLAASDI 469