Miyakogusa Predicted Gene

Lj0g3v0060169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060169.1 tr|A4S7P2|A4S7P2_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_18155,37.5,3e-18,FYVE/PHD zinc finger,Zinc finger,
FYVE/PHD-type; RING/U-box,NULL; ZF_RING_1,Zinc finger, RING-type,
,NODE_62393_length_2807_cov_10.026362.path1.1
         (594 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657...   430   e-120
AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710...    66   6e-11
AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain ...    57   3e-08
AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    56   7e-08
AT5G58610.1 | Symbols:  | PHD finger transcription factor, putat...    51   3e-06
AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...    50   3e-06
AT2G39100.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    50   6e-06

>AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657022
           FORWARD LENGTH=883
          Length = 883

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/498 (48%), Positives = 307/498 (61%), Gaps = 46/498 (9%)

Query: 134 VRKGKEKMEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPV 193
           V+KG++K+E +K +V+K VCGICLSEED RR++G L+CC+HYFCF CIMEW KVESRCP+
Sbjct: 394 VKKGEKKVELVKRDVIKNVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPL 453

Query: 194 CKQRFKTISKPARSSKGVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGG 253
           CKQRF+TISKPARS+ GV+LRE+VI VPERDQVYQP+EEELRSY+DPY+++IC+EC QG 
Sbjct: 454 CKQRFRTISKPARSTPGVDLREVVIPVPERDQVYQPTEEELRSYLDPYENIICTECHQGD 513

Query: 254 DDGLMLLCDVCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGTSSSQAQEADPIATIQSL 313
           DDGLMLLCD+CDS AHTYCVGLGREVPEGNWYC+GCRPVALG++SSQ             
Sbjct: 514 DDGLMLLCDLCDSSAHTYCVGLGREVPEGNWYCEGCRPVALGSASSQTHIISEQQRGSGF 573

Query: 314 HVRPSPVHVR-ESIDLNLIXX------XXXXXXXXXXXXXXVEGVSPVSGGAPTLSERRW 366
           + RPSP+ V  +  D++LI                       +G SP   GA TLS RR 
Sbjct: 574 YSRPSPLVVSGQYQDVSLIVSPRTPFFNGENLFSPRIPNGDAQGSSPSGLGATTLSRRRT 633

Query: 367 IHRXXXXXXSMDRMTSTTGRTNGISAISSTSDLYSSQIDQSRETS-SQFARTEDVGTSYH 425
           +HR      + DR+ +   RT G    +S+    ++QI   R    SQ   +++ G S +
Sbjct: 634 LHRHIQNIINGDRLINMGARTGG----TSSDGFVTTQIGHGRTIDPSQPVASQETGISLY 689

Query: 426 TFFAERLRNNISPLMQNEALWPRLLGTPPVPNYEQALQFNR-SNIV-----PDGSSF--- 476
               ERL NN S +  ++   P LL +P +  +     F R SN       P    F   
Sbjct: 690 AISEERLPNNNSLISAHD---PELL-SPKLDEFGSEEAFRRLSNNTFLGERPIDLGFHHG 745

Query: 477 -----PAVKEESNFH---------LVHEQLESMVTSHLKSLSQNIDLGQSTFMDIAKSCM 522
                P V  +   H         +  E+L+  V +HLK+LS   DLGQ+TF +I+   +
Sbjct: 746 LAQGDPLVSNQQRLHSHMPNTMSSMAGERLQERVKAHLKNLSSQNDLGQTTFDEISTCSI 805

Query: 523 HTILAACGLEHMKSEVCTVPPPSVCPHIEMM------AGGQSSLIKGCCSSCFDSFVGEV 576
           HTILAACGLEH  SEV  VPPP  C H  M       +   SSL+KGCC SCFDSFV +V
Sbjct: 806 HTILAACGLEHESSEVHLVPPPVTCTHHHMTPGSSSSSSSGSSLMKGCCYSCFDSFVEDV 865

Query: 577 VKRILDTRVSSQWLRLGL 594
           VK ILDTR    WL LGL
Sbjct: 866 VKMILDTR-QPHWLSLGL 882


>AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710923
           REVERSE LENGTH=192
          Length = 192

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 71/167 (42%), Gaps = 33/167 (19%)

Query: 146 SEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPVCKQRFKTIS--- 202
           +E+  + CGIC+   D    RGVL+CC H+FCF CI  W  + + CP+C++ F+ I+   
Sbjct: 24  TEIEGERCGICM---DIIIDRGVLDCCQHWFCFECIDNWSTIMNLCPLCQREFQLITCVP 80

Query: 203 --KPARSSKG----VELREMVIQVPERDQVYQPSEE-ELRSYIDPYDSVICSECLQG--- 252
                 SSK     V   E      E D V  PS   +   YID    V    CL G   
Sbjct: 81  VFDSGESSKVDEDLVSGDEDCCIEEETDVVSSPSHYIDDTHYIDENAVV----CLDGDLC 136

Query: 253 ----------GDDGL--MLLCDVCDSPAHTYCVGLGRE-VPEGNWYC 286
                     GD  L   + CD CD   H  CVG   E   E  W C
Sbjct: 137 KIRNTFSYIEGDSNLDTSIACDSCDMWYHAICVGFDVENASEDTWVC 183


>AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 |
            chr3:173316-182038 FORWARD LENGTH=2176
          Length = 2176

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 17/145 (11%)

Query: 161  DRRRVRGVLNCCTHYFCFACIMEWGKVE---SRCPVCKQRFKTISKPARSSKGVELREMV 217
            D R   G  +  T  F    +  W  +    +  P C     T+S+  +S    E+  +V
Sbjct: 1191 DLRLAAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLV 1250

Query: 218  IQVPERDQVYQPSEEELRSYID-----------PYDSVICSECLQGGDDGLMLLCDVCDS 266
             ++ +  ++   S E  +   D           P+D  +C  C    DD  +LLCD CD+
Sbjct: 1251 QKLKDYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDA 1310

Query: 267  PAHTYCVG--LGREVPEGNWYCDGC 289
              HTYC+   L R +P+GNWYC  C
Sbjct: 1311 EYHTYCLNPPLIR-IPDGNWYCPSC 1334


>AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein |
           chr1:25130099-25132169 FORWARD LENGTH=453
          Length = 453

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 19/169 (11%)

Query: 138 KEKMEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWG------KVESRC 191
           +E+ E  +    +  C IC +E    R  G+L C  H FC++CI +W       + ++ C
Sbjct: 285 REETEATEKAPAQVSCIICWTEFSSSR--GILPC-GHRFCYSCIQKWADRLVSERKKTTC 341

Query: 192 PVCKQRFKTISK--PARSSKGVELREMVIQVPERDQ--VYQPSEEELRSYIDPYDSVI-C 246
           P+CK  F TI+K   A SS      + V  +   +   V  P EEE R  ++P      C
Sbjct: 342 PLCKSNFITITKIEDADSSDQKIYSQTVPDLSSTNNILVVLPEEEEQRQTLNPLTRASGC 401

Query: 247 SECLQGGDDGLMLLCDVCD-SPAHTYCVGLGREVPEGNWYCDGCRPVAL 294
           S C     + L++ C +C+    H+YC+     +P   W C+ C  + +
Sbjct: 402 SRCYLTEPEELLIRCHLCNFRRIHSYCLD-PYLLP---WTCNHCNDLQM 446


>AT5G58610.1 | Symbols:  | PHD finger transcription factor, putative
           | chr5:23686771-23691053 REVERSE LENGTH=1065
          Length = 1065

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 210 GVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGGDDGLMLLCDVCDSPAH 269
           G  L E  ++  ++ +  QP +          + V CS C  GG    ++LCD C S  H
Sbjct: 661 GRSLLECQVEAYKKRKKAQPPDMLKMKLRQGENDVFCSVCHYGGK---LILCDGCPSAFH 717

Query: 270 TYCVGLGREVPEGNWYCD-----GCRPVALGTSSSQAQEADPIATIQ-SLHVRPS 318
             C+GL  +VP+G+W+C       C    L T+S+ A+E   I+  Q  L   PS
Sbjct: 718 ANCLGL-EDVPDGDWFCQSCCCGACGQFFLKTTSTNAKEEKFISCKQCELKYHPS 771


>AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:29020444-29022938 REVERSE LENGTH=522
          Length = 522

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 243 SVICSECLQGGDDGLMLLCDVCDSPAHTYCVGLGRE-VPEGNWYCDGCRPVALGTSSSQA 301
           S +C  CL   DD  ++LCD CD   H YC+    E VP G W+C  C+   L    ++ 
Sbjct: 402 SCLCRNCLTDKDDDKIVLCDGCDDAYHIYCMRPPCESVPNGEWFCTACKAAILKVQKARK 461

Query: 302 QEADPIATIQ 311
                + T+Q
Sbjct: 462 AFEKKMETVQ 471


>AT2G39100.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16317462-16318869 FORWARD LENGTH=296
          Length = 296

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 153 CGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPVCKQRFKT 200
           C ICL     RR   V+  C H +C ACI +W   +  CP+C  RF +
Sbjct: 39  CPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRFDS 86