Miyakogusa Predicted Gene
- Lj0g3v0060079.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0060079.1 Non Chatacterized Hit- tr|D8R358|D8R358_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,32.39,2e-16,seg,NULL;
coiled-coil,NULL,NODE_76121_length_1262_cov_12.358954.path1.1
(312 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 177 9e-45
AT4G17240.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 127 9e-30
>AT4G17240.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8
growth stages; Has 1142 Blast hits to 1055 proteins in
252 species: Archae - 22; Bacteria - 318; Metazoa - 248;
Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes -
396 (source: NCBI BLink). | chr4:9666799-9668292 REVERSE
LENGTH=343
Length = 343
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 148/243 (60%), Gaps = 34/243 (13%)
Query: 23 VIAQDLKK-DAKKVAG---FSALQKKLFXXXXXXXXXXXXXXXXXXXXXXGNTRTLAMVL 78
VI ++LKK D K G LQ+KLF NTRTL+MVL
Sbjct: 86 VIPEELKKIDTGKGGGKSTLGTLQRKLFGKEKVKALTEVKS----------NTRTLSMVL 135
Query: 79 RSERELLNINKEHEMEISQLKRMLEDKNKEVEKLKDLCLKQREEIKSLKSAVLFPDVMNS 138
RSERELL +NK+ E+EI++LK LE+KN+EVEKLKDLCLKQREEIKSLKSAVLFPD MNS
Sbjct: 136 RSERELLGMNKDQEVEIAELKFQLEEKNREVEKLKDLCLKQREEIKSLKSAVLFPDSMNS 195
Query: 139 QLQDLVEKQGSELKQAKQVIPALQQQVSSLTGQLQSLAEDLAEVKADKYSAKAGLQGYGS 198
Q+ Q EL QA+++IP LQ+QV SL GQLQ +A+DLAEVKA+KY +++
Sbjct: 196 QIN-----QMQELNQAREIIPNLQKQVISLNGQLQCIAQDLAEVKANKYLSESCYW---- 246
Query: 199 SPRTPTHAREDASNSWDFSSEXXXXXXXXXXXNPCLTPCNVKSRSREFEGMCSGSLHEDS 258
A+ + +S +FSS NPCLTP K + +E+E + S E+S
Sbjct: 247 ------QAQTSSYDSLEFSS-GSPDGLALEDLNPCLTPY-TKKKPKEYERVDSA---EES 295
Query: 259 LSG 261
LSG
Sbjct: 296 LSG 298
>AT4G17240.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8
growth stages. | chr4:9666799-9668292 REVERSE LENGTH=327
Length = 327
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 130/243 (53%), Gaps = 50/243 (20%)
Query: 23 VIAQDLKK-DAKKVAG---FSALQKKLFXXXXXXXXXXXXXXXXXXXXXXGNTRTLAMVL 78
VI ++LKK D K G LQ+KLF NTRTL+M+
Sbjct: 86 VIPEELKKIDTGKGGGKSTLGTLQRKLFGKEKVKALTEVKS----------NTRTLSMI- 134
Query: 79 RSERELLNINKEHEMEISQLKRMLEDKNKEVEKLKDLCLKQREEIKSLKSAVLFPDVMNS 138
E L + +Q+K L+ VEKLKDLCLKQREEIKSLKSAVLFPD MNS
Sbjct: 135 ---HERLAV-------CNQIKVFLQ-----VEKLKDLCLKQREEIKSLKSAVLFPDSMNS 179
Query: 139 QLQDLVEKQGSELKQAKQVIPALQQQVSSLTGQLQSLAEDLAEVKADKYSAKAGLQGYGS 198
Q+ Q EL QA+++IP LQ+QV SL GQLQ +A+DLAEVKA+KY +++
Sbjct: 180 QIN-----QMQELNQAREIIPNLQKQVISLNGQLQCIAQDLAEVKANKYLSESCYW---- 230
Query: 199 SPRTPTHAREDASNSWDFSSEXXXXXXXXXXXNPCLTPCNVKSRSREFEGMCSGSLHEDS 258
A+ + +S +FSS NPCLTP K + +E+E + S E+S
Sbjct: 231 ------QAQTSSYDSLEFSS-GSPDGLALEDLNPCLTPY-TKKKPKEYERVDSA---EES 279
Query: 259 LSG 261
LSG
Sbjct: 280 LSG 282