Miyakogusa Predicted Gene

Lj0g3v0059619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0059619.1 Non Chatacterized Hit- tr|I0Z6E7|I0Z6E7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,57.53,1e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL; AMP-ACTIVATED
PROTEIN KINASE, GAMMA REGULATORY SUBUNIT,NULL; Dom,CUFF.2677.1
         (491 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose n...   675   0.0  
AT1G27070.1 | Symbols:  | 5'-AMP-activated protein kinase-relate...    59   7e-09
AT3G01510.1 | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682 R...    55   1e-07
AT4G16360.2 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    52   1e-06
AT4G16360.3 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    52   1e-06
AT4G16360.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    52   1e-06

>AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose
           nonfermenting 4 | chr1:2900149-2904212 REVERSE
           LENGTH=487
          Length = 487

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/493 (66%), Positives = 387/493 (78%), Gaps = 9/493 (1%)

Query: 1   MFSQSMDPARGASGVGGTVLIPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQ 60
           MF  ++D +RG S   G +L P RFVWPYGGR VFL+GSFT W+E +PMSP+EGCPTVFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  VIYSLPPGYHQYKFFVDGEWRHDEHQPCVPGDYGIVNTVLLATDPNYIPV-ITTDAASEN 119
           VI +L PGYHQYKFFVDGEWRHDEHQP V G+ G+VNT+ + T P+ +P   + +    +
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFI-TGPDMVPAGFSPETLGRS 119

Query: 120 NMDVDNEAFRRMQIRLTDGTLSEVLPRISDADVQISRQRISAFLSMHTAYELLPESGKVV 179
           NMDVD+   R      T     E +PR+S  D+++SR RIS  LS  TAYELLPESGKV+
Sbjct: 120 NMDVDDVFLR------TADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVI 173

Query: 180 ALDVDLPVKQAFHILHEQGIYIAPLWDFSKGQFVGVLSAVDFVLILRELGNHGSNLTEEE 239
           ALDV+LPVKQAFHIL+EQGI +APLWDF KGQFVGVL  +DF+LILRELG HGSNLTEEE
Sbjct: 174 ALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEE 233

Query: 240 LETHTISAWKEGKSYLNRQNNRHGIALSRLFIHAGPYDNLKDIAMKILQKEVSTVPIMHS 299
           LETHTI+AWKEGK++++RQ +  G    R  +  GPYDNLKD+A+KILQ +V+ VP+++S
Sbjct: 234 LETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYS 293

Query: 300 SSEDGSYPQLLHLASLSGILKCICRYFRHCSSSLPILQFPICAIPVGTWVPKIGEXXXXX 359
           S +DGSYPQLLHLASLSGILKCICRYFRH SSSLPILQ PIC+IP+GTWVP+IGE     
Sbjct: 294 SLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKP 353

Query: 360 XXXXXXXXXXXXXXXXXVQAEVSSIPIVDDNDSLLDIYCRSDITALAKDRAYSHINLDEM 419
                            VQAEVSSIP+VDDNDSL+DIY RSDITALAKD+AY+ I+LD+M
Sbjct: 354 LATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDM 413

Query: 420 TVHEALQLGQDAYSPYEL-RSQRCQMCLRSDSLQKVMERLANPGVRRLVIVEAGSKRVEG 478
           TVH+ALQLGQDA  PY +   QRC MCLRSDSL KVMERLANPGVRRLVIVEAGSKRVEG
Sbjct: 414 TVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEG 473

Query: 479 IVSLSDIFKFFLG 491
           I+SLSD+F+F LG
Sbjct: 474 IISLSDVFQFLLG 486


>AT1G27070.1 | Symbols:  | 5'-AMP-activated protein kinase-related |
           chr1:9396945-9399225 REVERSE LENGTH=532
          Length = 532

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 19  VLIPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDG 78
           +L     VWP     V LTGSF GWS    M   E    VF +   L PG ++ KF VDG
Sbjct: 451 LLRTASIVWPNSASEVLLTGSFDGWSTQRKMKKAENG--VFSLSLKLYPGKYEIKFIVDG 508

Query: 79  EWRHDEHQPCVPGDYGIVNTVLL 101
           +W+ D  +P V    G  N +L+
Sbjct: 509 QWKVDPLRPIVTSG-GYENNLLI 530


>AT3G01510.1 | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682
           REVERSE LENGTH=591
          Length = 591

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 17  GTVLIPMRFVWP-YGGRSVFLTGSFTG-WSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKF 74
           GT    + FVW  + G  V L G FTG W EP+  +  +G P  F+    L  G + YK+
Sbjct: 451 GTPTHSVTFVWNGHEGEEVLLVGDFTGNWKEPIKATH-KGGPR-FETEVRLTQGKYYYKY 508

Query: 75  FVDGEWRHDEHQPCVPGDYGIVNTVLLATD-PNYIPVITTDAASENNMDV------DNEA 127
            ++G+WRH    P    D G  N +++  D  N  P I       N + V      ++E 
Sbjct: 509 IINGDWRHSATSPTERDDRGNTNNIIVVGDVANVRPTIQQPRKDANIIKVIERVLTESER 568

Query: 128 FR 129
           FR
Sbjct: 569 FR 570


>AT4G16360.2 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245662-9246833 FORWARD
           LENGTH=258
          Length = 258

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 21  IPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEW 80
           IP    W +GG+ + + GS+  W      S ++     F ++  LP G ++Y+F VDG+W
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWK----TSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQW 127

Query: 81  RHDEHQPCVPGDYGIVNTVLLATDPNYIP 109
           RH    P    D G    +L   D  Y+P
Sbjct: 128 RHAPELPLARDDAGNTFNILDLQD--YVP 154


>AT4G16360.3 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245571-9246833 FORWARD
           LENGTH=261
          Length = 261

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 21  IPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEW 80
           IP    W +GG+ + + GS+  W      S ++     F ++  LP G ++Y+F VDG+W
Sbjct: 74  IPTMITWCHGGKEIAVEGSWDNWKT---RSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQW 130

Query: 81  RHDEHQPCVPGDYGIVNTVLLATDPNYIP 109
           RH    P    D G    +L   D  Y+P
Sbjct: 131 RHAPELPLARDDAGNTFNILDLQD--YVP 157


>AT4G16360.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245662-9246833 FORWARD
           LENGTH=259
          Length = 259

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 21  IPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEW 80
           IP    W +GG+ + + GS+  W      S ++     F ++  LP G ++Y+F VDG+W
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWKT---RSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQW 128

Query: 81  RHDEHQPCVPGDYGIVNTVLLATDPNYIP 109
           RH    P    D G    +L   D  Y+P
Sbjct: 129 RHAPELPLARDDAGNTFNILDLQD--YVP 155