Miyakogusa Predicted Gene

Lj0g3v0058659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0058659.1 Non Chatacterized Hit- tr|I1KY01|I1KY01_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,51.49,1e-18,
,CUFF.2577.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18260.1 | Symbols:  | Cytochrome b561/ferric reductase trans...    57   3e-09
AT2G30890.1 | Symbols:  | Cytochrome b561/ferric reductase trans...    56   5e-09

>AT4G18260.1 | Symbols:  | Cytochrome b561/ferric reductase
           transmembrane protein family | chr4:10093524-10097337
           REVERSE LENGTH=545
          Length = 545

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 28  KAKGIHSRNKDHHTKINPRLHFEITLHGFLLWASLAFLMPVGVLVIRLSS-ADGNRRRLR 86
           K KG   ++K  H  IN      I LHG LLW S+ FLMPVG+L IR+++ A  N  +++
Sbjct: 43  KTKGSLEQDKLSHQMINS-----IKLHGILLWVSMGFLMPVGILFIRMANKAHENGIKVK 97

Query: 87  IIFYAHAVLQ 96
           + FY H + Q
Sbjct: 98  VFFYLHVIFQ 107


>AT2G30890.1 | Symbols:  | Cytochrome b561/ferric reductase
          transmembrane protein family | chr2:13147774-13149663
          FORWARD LENGTH=257
          Length = 257

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 42 KINPRLHFEITLHGFLLWASLAFLMPVGVLVIRLSS-ADGNRRRLRIIFYAHAVLQ 96
          K+NP+L +EI +HGF+LWA++  LMP+G++ IRL S  D     LR +F+ H   Q
Sbjct: 44 KLNPKLVYEIKVHGFMLWAAMGVLMPIGIISIRLMSIKDQPIITLRRLFFLHVTSQ 99