Miyakogusa Predicted Gene

Lj0g3v0058359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0058359.1 tr|C1EBX4|C1EBX4_MICSR Tubulin gamma chain
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=TUBG PE=3
S,64.29,0.00000000000002,no description,Tubulin, C-terminal; Tubulin
C-terminal domain-like,Tubulin/FtsZ, C-terminal;
TUBULIN,NODE_62018_length_299_cov_136.782608.path2.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61650.1 | Symbols: TUBG1 | gamma-tubulin | chr3:22812601-228...   122   6e-29
AT5G05620.1 | Symbols: TUBG2, ATGCP2, GCP2 | gamma-tubulin  comp...   120   1e-28

>AT3G61650.1 | Symbols: TUBG1 | gamma-tubulin |
           chr3:22812601-22815011 REVERSE LENGTH=474
          Length = 474

 Score =  122 bits (305), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/57 (100%), Positives = 57/57 (100%)

Query: 1   MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLV 57
           MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLV
Sbjct: 379 MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLV 435


>AT5G05620.1 | Symbols: TUBG2, ATGCP2, GCP2 | gamma-tubulin  complex
           protein 2 | chr5:1679340-1681719 FORWARD LENGTH=474
          Length = 474

 Score =  120 bits (302), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/57 (98%), Positives = 57/57 (100%)

Query: 1   MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLV 57
           MLASHTSIRHLFS+CLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLV
Sbjct: 379 MLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLV 435