Miyakogusa Predicted Gene

Lj0g3v0058349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0058349.1 tr|Q8LKL1|Q8LKL1_9MARC Tubulin gamma chain
OS=Conocephalum japonicum GN=gtb1 PE=3
SV=1,100,0.000000000000007,Tubulin_C,Tubulin/FtsZ, 2-layer sandwich
domain; no description,Tubulin/FtsZ, 2-layer sandwich
domai,NODE_65609_length_100_cov_42.970001.path1.1
         (42 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05620.1 | Symbols: TUBG2, ATGCP2, GCP2 | gamma-tubulin  comp...    81   1e-16
AT3G61650.1 | Symbols: TUBG1 | gamma-tubulin | chr3:22812601-228...    81   2e-16

>AT5G05620.1 | Symbols: TUBG2, ATGCP2, GCP2 | gamma-tubulin  complex
           protein 2 | chr5:1679340-1681719 FORWARD LENGTH=474
          Length = 474

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 40/42 (95%)

Query: 1   MRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQV 42
           MRRLLQ KNIMVSSYAR K+ASQAKYISILNIIQGEVDPTQV
Sbjct: 294 MRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQV 335


>AT3G61650.1 | Symbols: TUBG1 | gamma-tubulin |
           chr3:22812601-22815011 REVERSE LENGTH=474
          Length = 474

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 40/42 (95%)

Query: 1   MRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQV 42
           MRRLLQ KNIMVSSYAR K+ASQAKYISILNIIQGEVDPTQV
Sbjct: 294 MRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQV 335