Miyakogusa Predicted Gene

Lj0g3v0058309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0058309.1 tr|B9H863|B9H863_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_651728 PE=4
SV=1,50.33,9e-18,seg,NULL,CUFF.2579.1
         (347 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    68   1e-11
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    68   1e-11
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    68   1e-11
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact...    68   1e-11
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact...    66   4e-11
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact...    66   4e-11
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l...    50   3e-06
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l...    50   3e-06

>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting
          factor 3-like 6 | chr3:21828189-21829895 REVERSE
          LENGTH=444
          Length = 444

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 19/97 (19%)

Query: 7  DWNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPT 66
          DWNF  +  ++  K+ I  +++LVE+LW++GQ+VLQSQA ++  V      QV    Q T
Sbjct: 7  DWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSV------QVQTHKQET 60

Query: 67 LRTSD-------------PFGMIQDDETISWIQYPPD 90
          LR  +              +  + D ET+SWIQYPPD
Sbjct: 61 LRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPD 97


>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting
          factor 3-like 6 | chr3:21828189-21829895 REVERSE
          LENGTH=444
          Length = 444

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 19/97 (19%)

Query: 7  DWNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPT 66
          DWNF  +  ++  K+ I  +++LVE+LW++GQ+VLQSQA ++  V      QV    Q T
Sbjct: 7  DWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSV------QVQTHKQET 60

Query: 67 LRTSD-------------PFGMIQDDETISWIQYPPD 90
          LR  +              +  + D ET+SWIQYPPD
Sbjct: 61 LRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPD 97


>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting
          factor 3-like 6 | chr3:21828189-21829895 REVERSE
          LENGTH=444
          Length = 444

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 19/97 (19%)

Query: 7  DWNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPT 66
          DWNF  +  ++  K+ I  +++LVE+LW++GQ+VLQSQA ++  V      QV    Q T
Sbjct: 7  DWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSV------QVQTHKQET 60

Query: 67 LRTSD-------------PFGMIQDDETISWIQYPPD 90
          LR  +              +  + D ET+SWIQYPPD
Sbjct: 61 LRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPD 97


>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting
          factor 3-like 6 | chr3:21828189-21829895 REVERSE
          LENGTH=442
          Length = 442

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 19/97 (19%)

Query: 7  DWNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPT 66
          DWNF  +  ++  K+ I  +++LVE+LW++GQ+VLQSQA ++  V      QV    Q T
Sbjct: 7  DWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSV------QVQTHKQET 60

Query: 67 LRTSD-------------PFGMIQDDETISWIQYPPD 90
          LR  +              +  + D ET+SWIQYPPD
Sbjct: 61 LRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPD 97


>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome
          interacting factor 4 | chr2:17887003-17888823 FORWARD
          LENGTH=428
          Length = 428

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 8  WNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPTL 67
          W+F  +  L+  ++ I   ++LVE+LW++GQ+VLQSQ H++         Q     +  L
Sbjct: 6  WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQT-----QTQKQDHHEEAL 60

Query: 68 RTSDPFGMIQDDETISWIQYPPD 90
          R+S     ++D ET+SWIQYPPD
Sbjct: 61 RSS---TFLEDQETVSWIQYPPD 80


>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome
          interacting factor 4 | chr2:17887003-17888823 FORWARD
          LENGTH=430
          Length = 430

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 8  WNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPTL 67
          W+F  +  L+  ++ I   ++LVE+LW++GQ+VLQSQ H++         Q     +  L
Sbjct: 6  WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQT-----QTQKQDHHEEAL 60

Query: 68 RTSDPFGMIQDDETISWIQYPPD 90
          R+S     ++D ET+SWIQYPPD
Sbjct: 61 RSS---TFLEDQETVSWIQYPPD 80


>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor
          3-like 5 | chr2:8704276-8706538 REVERSE LENGTH=478
          Length = 478

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 23 IGMDNDLVEILWQNGQLVLQSQ-AHKKSVVNSIASR--QVNKKFQPTLRTSDPFGMIQDD 79
          +G D+DL+E+LWQNGQ+V+Q+Q  H K   +S       ++ + QP   +SD    IQ+D
Sbjct: 33 MGEDDDLMELLWQNGQVVVQNQRLHTKKPSSSPPKLLPSMDPQQQP---SSDQNLFIQED 89

Query: 80 ETISWIQYP 88
          E  SW+ YP
Sbjct: 90 EMTSWLHYP 98


>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor
          3-like 5 | chr2:8704525-8706538 REVERSE LENGTH=478
          Length = 478

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 23 IGMDNDLVEILWQNGQLVLQSQ-AHKKSVVNSIASR--QVNKKFQPTLRTSDPFGMIQDD 79
          +G D+DL+E+LWQNGQ+V+Q+Q  H K   +S       ++ + QP   +SD    IQ+D
Sbjct: 33 MGEDDDLMELLWQNGQVVVQNQRLHTKKPSSSPPKLLPSMDPQQQP---SSDQNLFIQED 89

Query: 80 ETISWIQYP 88
          E  SW+ YP
Sbjct: 90 EMTSWLHYP 98