Miyakogusa Predicted Gene
- Lj0g3v0058059.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0058059.2 Non Chatacterized Hit- tr|I1JJ07|I1JJ07_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,57.21,0,Helicase associated domain (HA2) Add an
ann,Helicase-associated domain; HA2,Helicase-associated
dom,CUFF.2556.2
(413 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu... 353 9e-98
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204... 338 3e-93
AT2G35920.1 | Symbols: | RNA helicase family protein | chr2:150... 146 3e-35
AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 144 1e-34
AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 140 2e-33
AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 140 2e-33
AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 132 3e-31
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:214... 118 9e-27
AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:214... 110 2e-24
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 68 1e-11
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote... 61 2e-09
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1... 61 2e-09
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c... 59 5e-09
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:193... 57 2e-08
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:230... 57 2e-08
AT1G27900.1 | Symbols: | RNA helicase family protein | chr1:971... 51 1e-06
>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and
tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
Length = 1299
Score = 353 bits (907), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 197/413 (47%), Positives = 268/413 (64%), Gaps = 44/413 (10%)
Query: 1 MPIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKK 60
MP+E+LCLQVK+LDP+ + FL + LDPP +SI NA+++LQ IG L+ E+LTELG+K
Sbjct: 698 MPVEELCLQVKILDPNCKTNDFLQKLLDPPVDQSIANALSILQDIGALTPQEELTELGEK 757
Query: 61 LGSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELAS 120
G LPVHPL +ML F++L+NCLDPALTL CA+ + +PFT P+ E+++AAAA+ ELAS
Sbjct: 758 FGHLPVHPLISKMLFFAVLVNCLDPALTLACAADYKEPFTMPMSPVERQKAAAAKLELAS 817
Query: 121 LYGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGL 180
L GG SDHL ++A FECW+N+ GL FCSQYFVS S M ML MR++L +EL ++G+
Sbjct: 818 LCGGDSDHLAVVAAFECWKNAKGRGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGI 877
Query: 181 IHDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLPN-ESGKRVFVKTETCNEVGLTSHSV 239
I +D+SS NS DPGIL AVL G+YP++G+ P + +R V+T + +V + S S
Sbjct: 878 IPNDISSCSQNSRDPGILRAVLAVGLYPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSN 937
Query: 240 NFKLFSQKNFGCSLLAYDEIARDDWGMSISNCSVVGPLPLLLLCKEIAVTSI-------- 291
NF L S+K + SLL +DEI R D GM I NC+V LPLLL+ EIAV
Sbjct: 938 NFNLSSKK-YDESLLVFDEITRGDGGMHIRNCTVARDLPLLLISTEIAVAPTGSSDSDDS 996
Query: 292 -------------------------------KDSKEGDK---SSDNIVRVIVDRWLDFRS 317
++S+ G K S +N V+++VDRWL FR+
Sbjct: 997 NEEEEDDEEVAANTNEEVAANTNEEGMDIHKEESRRGAKMMSSPENSVKLVVDRWLPFRT 1056
Query: 318 KALDISHMNYLRNQLSAAILFKVTHSKFVLPPFLGAAMNALACILSCDGLSGI 370
AL+++ M LR +L A+ILFKVTH + LPP LGA+M+A+A ILS DG +G+
Sbjct: 1057 TALEVAQMYILRERLMASILFKVTHPREHLPPHLGASMHAIAGILSYDGHAGL 1109
>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
chr1:2040567-2047333 FORWARD LENGTH=1576
Length = 1576
Score = 338 bits (868), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 180/425 (42%), Positives = 263/425 (61%), Gaps = 32/425 (7%)
Query: 1 MPIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKK 60
MP+++LCLQVK+LDP+ + FL + +DPP +SIENA+ +L+ IG L+ E+LTELG+K
Sbjct: 722 MPVDELCLQVKMLDPNCNVNDFLQKLMDPPVAQSIENALIILKDIGALTPEEELTELGQK 781
Query: 61 LGSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELAS 120
G LPVHP +M+ F+IL+NCLDPAL L CA+ DPFT P+ ++K+AAAA+ ELAS
Sbjct: 782 FGQLPVHPRISKMIYFAILVNCLDPALILACAADEKDPFTMPLSPGDRKKAAAAKHELAS 841
Query: 121 LYGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGL 180
LYG SDHL +A F+CW+N+ G + FCS+YF+SQ M L + +L EL ++G+
Sbjct: 842 LYGDHSDHLATVAAFQCWKNAKASGQAKEFCSKYFISQVVMKRLDDLCRKLQGELNRHGV 901
Query: 181 IHDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLP-NESGKRVFVKTETCNEVGLTSHSV 239
I S+ LN+HDPGIL AV+ G+YP+LG+ P +++ R ++T +V + S S
Sbjct: 902 IPSSSSNCSLNAHDPGILRAVIAVGLYPMLGRMCPLSKNRTRSVIETIAGAKVRVPSLSN 961
Query: 240 NFKLFSQKNFGCSLLAYDEIARDDWGMSISNCSVVGPLPLLLLCKEIAVTSIK--DSKEG 297
N + S K F +L+ +DEI R DWG+ I +C+V+ +P+LL +EIAV++ + D+ +
Sbjct: 962 NVDMSSTK-FDEALIVFDEITRGDWGVVIRSCTVLPTIPVLLFSREIAVSTTESYDAVKS 1020
Query: 298 DKSSD----------------------------NIVRVIVDRWLDFRSKALDISHMNYLR 329
D D N V+V+VDRWL F+ A +I+ M LR
Sbjct: 1021 DDEEDHKVGNVGDAMDIDKEVGRPGEKIMLGPENSVKVVVDRWLPFKVTAFEIAQMYILR 1080
Query: 330 NQLSAAILFKVTHSKFVLPPFLGAAMNALACILSCDGLSGIPQTSDGADSLITTVNATNL 389
+L A+ILFKV H K LPP LGA+M A+A +LS D L+ + + + V+AT+
Sbjct: 1081 ERLMASILFKVKHPKENLPPHLGASMYAIASVLSYDSLAQSSVQTVAVQPITSVVDATSP 1140
Query: 390 GKQVP 394
+P
Sbjct: 1141 RDDIP 1145
>AT2G35920.1 | Symbols: | RNA helicase family protein |
chr2:15075674-15080506 FORWARD LENGTH=995
Length = 995
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 142/258 (55%), Gaps = 11/258 (4%)
Query: 2 PIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKL 61
P+++LCL +K L S I +FL++ L PPD ++ENA+ +L+ IG L++ E+LT LG+ L
Sbjct: 651 PLQELCLHIKSLQVGS-IGSFLAKALQPPDALAVENAIELLKTIGALNDVEELTPLGRHL 709
Query: 62 GSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASL 121
+LPV P G+ML+ + C++PALT+ A + PF P+ E+ A F S
Sbjct: 710 CTLPVDPNIGKMLLIGAIFQCVNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDS- 768
Query: 122 YGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI 181
CSDH+ ++ +E ++++ R G E+ FC Q F+S T+ M+ MR + L G +
Sbjct: 769 ---CSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFV 825
Query: 182 -HDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVN 240
++Y S+D +++AVL AG+YP + + GKR T+ +V + SVN
Sbjct: 826 DKSKPNAYNQYSYDMEMISAVLCAGLYPNVVQC--KRRGKRTAFYTKELGKVDIHPGSVN 883
Query: 241 FKLFSQKNFGCSLLAYDE 258
++ F L Y E
Sbjct: 884 ARV---NLFSLPYLVYSE 898
>AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:1428796-1434516 FORWARD LENGTH=1161
Length = 1161
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 21/293 (7%)
Query: 2 PIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKL 61
P+ LCLQ+K L S I FLS L P+ +++NA+ L+ IG L E E LT+LGK L
Sbjct: 687 PLNSLCLQIKSLQVES-IAEFLSAALQAPESLAVQNAIGFLKMIGALDEKENLTDLGKLL 745
Query: 62 GSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASL 121
LPV P G+MLI + C DP LT+ DPF P D+K A +A+ ++
Sbjct: 746 SILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRDPFLLP--QDKKDLALSAKLRFSA- 802
Query: 122 YGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI 181
SDH+ ++ FE W+++ R G FC + F+S T+ + S+R + L + GL+
Sbjct: 803 -KDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGLV 861
Query: 182 HDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVNF 241
HDD++ SH+ ++ AV+ +G++P + + E+ + KT +V L ++SVN
Sbjct: 862 HDDLALNNKLSHNQSLVRAVICSGLFPGIASVVHRETS--MSFKTMDDGQVSLYANSVNS 919
Query: 242 K---------LFSQKNFGCSLLAYDEIARDD-----WGMSISNCSVVGPLPLL 280
+ +F +K ++L D D +G S+S VG L +L
Sbjct: 920 RFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGSLSTGVQVGHLKML 972
>AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989670-17995169 REVERSE LENGTH=1197
Length = 1197
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 8/239 (3%)
Query: 2 PIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKL 61
P++ LCLQ+K L S I FLS+ L PP+ S++NAV L+ IG L + E LT LGK L
Sbjct: 726 PLQSLCLQIKSLGLGS-ISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNL 784
Query: 62 GSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASL 121
LPV P G+MLI + NCLDP +T+ DPF P D+K A AR + +
Sbjct: 785 SMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPF--DKKDLAETARSKFSGR 842
Query: 122 YGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI 181
SDHL ++ + W+++ R +C + F+S T+ + SMR + L + LI
Sbjct: 843 --DYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI 900
Query: 182 HDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVN 240
D++ SHD ++ A++ AGM+P + + E K + +KT +V L S SVN
Sbjct: 901 -DNIEGCSKLSHDEHLVRAIICAGMFPGVCSVVNKE--KSITLKTMEDGQVLLYSSSVN 956
>AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989517-17995169 REVERSE LENGTH=1206
Length = 1206
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 8/239 (3%)
Query: 2 PIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKL 61
P++ LCLQ+K L S I FLS+ L PP+ S++NAV L+ IG L + E LT LGK L
Sbjct: 726 PLQSLCLQIKSLGLGS-ISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNL 784
Query: 62 GSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASL 121
LPV P G+MLI + NCLDP +T+ DPF P D+K A AR + +
Sbjct: 785 SMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPF--DKKDLAETARSKFSGR 842
Query: 122 YGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI 181
SDHL ++ + W+++ R +C + F+S T+ + SMR + L + LI
Sbjct: 843 --DYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI 900
Query: 182 HDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVN 240
D++ SHD ++ A++ AGM+P + + E K + +KT +V L S SVN
Sbjct: 901 -DNIEGCSKLSHDEHLVRAIICAGMFPGVCSVVNKE--KSITLKTMEDGQVLLYSSSVN 956
>AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:88847-94635 REVERSE LENGTH=1113
Length = 1113
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 149/294 (50%), Gaps = 24/294 (8%)
Query: 2 PIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKL 61
P+ LCLQ+K L+ S I FLS+ L P+L +++ A+A L+ IG L E+E LT LG+ L
Sbjct: 646 PLHSLCLQIKSLNLGS-ISEFLSRALQSPELLAVQKAIAFLKIIGALDENEDLTTLGRYL 704
Query: 62 GSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASL 121
LP+ P G+MLI ++ CLDP LT+ DPF P D+K A AA+ + +
Sbjct: 705 SKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTP--QDKKDLAEAAKSQFSRD 762
Query: 122 YGGCSDHLPIIAVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI 181
+ SDHL ++ +E W+ + +C + F+S ++ + S+R E + L GLI
Sbjct: 763 H---SDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLI 819
Query: 182 HDDVSSYCLNSHDPGILNAVLVAGMYPVLGKSLPNESGKRVF-VKTETCNEVGLTSHSVN 240
+ S +D + AV+ GMYP + + NE R F +KT +V L S+S N
Sbjct: 820 DGNPSICNSEGNDANLTRAVICYGMYPGICSVVHNE---RSFSLKTMEDGQVLLYSNSEN 876
Query: 241 FK---------LFSQKNFGCSLLAYDEIARDD-----WGMSISNCSVVGPLPLL 280
+ +F++K S+ D A D +G SIS G L +L
Sbjct: 877 ARETKIPYPWLVFNEKIKVNSVFLRDSTACSDSTLILFGGSISKGDTDGHLKML 930
>AT1G58060.1 | Symbols: | RNA helicase family protein |
chr1:21489480-21501775 REVERSE LENGTH=1459
Length = 1459
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 36/241 (14%)
Query: 1 MPIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKK 60
MP+ +LCLQ+KLL I+ FLS+ L+PP ++ +A+++L +G + E+LT LG
Sbjct: 1063 MPLVELCLQIKLLG-LGHIKPFLSRALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHH 1121
Query: 61 LGSLPVHPLAGRMLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELAS 120
L LPV L G+ML++ + CL P L++ + PF +P DEK+ + L S
Sbjct: 1122 LAKLPVDVLIGKMLLYGGIFGCLSPILSIAAFLSYKSPFIYP--KDEKQNVDRVKLALLS 1179
Query: 121 LYGGC----------SDHLPIIAVFECWQ---NSTRMGLEERFCSQYFVSQSTMHMLSSM 167
G SDHL ++ ++ W M +RFC F+S S M M+ M
Sbjct: 1180 DNGVSSSDLNNNDRQSDHLLMMVAYDKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDM 1239
Query: 168 RTELATELFQNGLIH--------------------DDVSSYCLNSHDPGILNAVLVAGMY 207
R + T L GLI+ D + + S P ++ A+L AG+Y
Sbjct: 1240 RVQFGTLLADIGLINLPKTGEFSGRKKENLDVWFSDPTQPFNMYSQQPEVVKAILCAGLY 1299
Query: 208 P 208
P
Sbjct: 1300 P 1300
>AT1G58050.1 | Symbols: | RNA helicase family protein |
chr1:21478590-21487839 REVERSE LENGTH=1417
Length = 1417
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 150/353 (42%), Gaps = 50/353 (14%)
Query: 1 MPIEDLCLQVKLLDPSSRIEAFLSQTLDPPDLKSIENAVAVLQRIGVLSESEKLTELGKK 60
+P+ +LCL +KLL +I+ FLS+ L+PP +I +A+ +L ++G L E+LT LG
Sbjct: 1030 VPLVELCLHIKLLG-LGQIKPFLSKALEPPSESAINSAILLLHKVGALEGDEELTPLGHH 1088
Query: 61 LGSLPVHPLAGRMLIFSILMNCLDPALTLEC-ASVFDDPFTHPVLHDEKKRAAAA----R 115
L LPV L G+ML++ + CL P L++ S PF + R A +
Sbjct: 1089 LAKLPVDLLIGKMLLYGGIFGCLSPILSIAAFLSCCKSPFVYAKDEQNVDRVKLALLSDK 1148
Query: 116 FELASLYGGC---SDHLPIIAVFECWQ---NSTRMGLEERFCSQYFVSQSTMHMLSSMRT 169
E +S SDHL ++ +E W + E FC F++ S M M+ R
Sbjct: 1149 LESSSNLNNNDRQSDHLLMVVAYEKWVRILHEQGFKAAESFCESKFLNSSVMRMMRERRV 1208
Query: 170 ELATELFQNGLIH-----------------DDVSSYCLNSHDPGILNAVLVAGMYPVLGK 212
E L GLI+ D + + S +P ++ A+L AG+ P + +
Sbjct: 1209 EFGMLLADIGLINLPKGKGRRKENFDVWFSDKTQPFNMYSQEPEVVKAILCAGLCPNIAE 1268
Query: 213 SL------PNESGKRVFVKTETCNEVGLTSHSVNFKLFSQKNFGCSLLAYDEIARDDWGM 266
L P E +R V + EV + +S+N K F + + E +
Sbjct: 1269 GLVNRLTKPAEETQRYAVWHDGKREVHIHRNSINKNC---KAFQYPFIVFLEKLETKKVV 1325
Query: 267 SISNCSVVGPLPLLLLCKEIAVTSIKDSKEGDKSSDNIVRVIVDRWLDFRSKA 319
+ + +VV P +LL I V S V +D WL + A
Sbjct: 1326 YLQDTTVVSPFSILLFGGSINVHHQSGS------------VTIDGWLKLTAPA 1366
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE LENGTH=1168
Length = 1168
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
+DPP +++ +A+ L +G L E LT+LG+K+ P+ P +ML+ S+ + C D
Sbjct: 896 MDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEI 955
Query: 87 LTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNSTRMGL 146
LT+ + F P +++ A A + A + DHL ++AV+E W+ G
Sbjct: 956 LTMIAMIQTGNIFYRP-----REKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGP 1010
Query: 147 EERFCSQYFVSQSTMHMLSSMRTEL 171
+C + F+ ++ +R +L
Sbjct: 1011 ---WCFENFIQSRSLRRAQDVRKQL 1032
>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
| chr1:11742356-11749286 REVERSE LENGTH=1044
Length = 1044
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
+DPP +++ ++ +L +G L++ +LT+ G+++ P+ P+ +M++ S C D
Sbjct: 785 MDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEI 844
Query: 87 LTLECA-SVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNSTRMG 145
+++ S+ F P D++ A AR + G DH+ ++ V+ W+ +
Sbjct: 845 ISIAAMLSIGGSIFYRP--KDKQVHADNARMNFHT--GNVGDHIALLKVYSSWKET---N 897
Query: 146 LEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNSHDPGILNAVLVAG 205
++C + ++ +M +R +L L + + D+SS LN D + +VAG
Sbjct: 898 FSTQWCYENYIQVRSMKRARDIRDQLEGLLER---VEIDISS-NLNELDS--VRKSIVAG 951
Query: 206 MYPVLGKSLPNESGKRV 222
+P K N S + V
Sbjct: 952 FFPHTAKLQKNGSYRTV 968
>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1034
Length = 1034
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
+DPP +++ ++ +L +G L++ +LT+ G+++ P+ P+ +M++ S C D
Sbjct: 775 MDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEI 834
Query: 87 LTLECA-SVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNSTRMG 145
+++ S+ F P D++ A AR + G DH+ ++ V+ W+ +
Sbjct: 835 ISIAAMLSIGGSIFYRP--KDKQVHADNARMNFHT--GNVGDHIALLKVYSSWKETN--- 887
Query: 146 LEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNSHDPGILNAVLVAG 205
++C + ++ +M +R +L L + + D+SS LN D + +VAG
Sbjct: 888 FSTQWCYENYIQVRSMKRARDIRDQLEGLLER---VEIDISS-NLNELDS--VRKSIVAG 941
Query: 206 MYPVLGKSLPNESGKRV 222
+P K N S + V
Sbjct: 942 FFPHTAKLQKNGSYRTV 958
>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
chr5:4122747-4128660 FORWARD LENGTH=1255
Length = 1255
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
+DPP ++I N++ L +G L+ LT+LG K+ P+ P +ML+ ++C+D
Sbjct: 943 MDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEV 1002
Query: 87 LTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNSTRMGL 146
LT+ F P E+ AA +F + SDHL ++ V++ W+ G
Sbjct: 1003 LTIVSMLSVPSVFFRPKERAEESDAAREKFFVPE-----SDHLTLLNVYQQWKEHDYRG- 1056
Query: 147 EERFCSQYFVSQSTMHMLSSMRTEL 171
+C+ +++ + +R++L
Sbjct: 1057 --DWCNDHYLQVKGLRKAREVRSQL 1079
>AT2G47250.1 | Symbols: | RNA helicase family protein |
chr2:19399923-19402981 REVERSE LENGTH=729
Length = 729
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
+DPP +++ A+ VL +G L + LT+ G+ + P+ P +MLI S NC +
Sbjct: 459 MDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEI 518
Query: 87 LTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNSTRMGL 146
L++ + F P + +K A A+ + G DHL ++ V+ ++ +
Sbjct: 519 LSVSAMLSVPNCFVRP--REAQKAADEAKARFGHIDG---DHLTLLNVYHAYKQNNE--- 570
Query: 147 EERFCSQYFVSQSTMHMLSSMRTEL 171
+ +C + FV+ M ++R +L
Sbjct: 571 DPNWCFENFVNNRAMKSADNVRQQL 595
>AT3G62310.1 | Symbols: | RNA helicase family protein |
chr3:23057516-23060561 REVERSE LENGTH=726
Length = 726
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 12/182 (6%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
+DPP +++ A+ VL +G L + LT+ G+ + P+ P +MLI S NC +
Sbjct: 455 MDPPAPETLMRALEVLNYLGALDDDGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEI 514
Query: 87 LTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNSTRMGL 146
L++ + F P + +K A A+ + G DHL ++ V+ ++ +
Sbjct: 515 LSVSAMLSVPNCFIRP--REAQKAADEAKARFGHIEG---DHLTLLNVYHAFKQNNE--- 566
Query: 147 EERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNSHDPGI-LNAVLVAG 205
+ +C + F++ M ++R +L + + L + S NS D I + ++AG
Sbjct: 567 DPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL---KMCSTDFNSRDYYINIRKAMLAG 623
Query: 206 MY 207
+
Sbjct: 624 YF 625
>AT1G27900.1 | Symbols: | RNA helicase family protein |
chr1:9715615-9720346 REVERSE LENGTH=700
Length = 700
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 27 LDPPDLKSIENAVAVLQRIGVLSESEKLTELGKKLGSLPVHPLAGRMLIFSILMNCLDPA 86
LD P +S+E+A+ L I + E+ +T +G+ + LP+ P R LI + CL A
Sbjct: 389 LDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEANETGCLSQA 448
Query: 87 LT----LECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPIIAVFECWQNST 142
LT L + + P EKKR L + G DH+ ++ +FE W
Sbjct: 449 LTVVAMLSAETTLLPARSKP---SEKKRKHDEDSNLPN-GSGYGDHIQLLQIFESWD--- 501
Query: 143 RMGLEERFCSQYFVSQSTMHMLSSMRTEL 171
R + +C + + M + +R +L
Sbjct: 502 RTNYDPVWCKENGMQVRGMVFVKDVRRQL 530