Miyakogusa Predicted Gene

Lj0g3v0057569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0057569.1 Non Chatacterized Hit- tr|I1R080|I1R080_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,45.1,0.000000000000002,seg,NULL; HCP-like,NULL; no
description,NULL; no description,Tetratricopeptide-like
helical,CUFF.2546.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67340.1 | Symbols:  | HCP-like superfamily protein with MYND...   248   2e-66
AT5G50450.1 | Symbols:  | HCP-like superfamily protein with MYND...   228   3e-60

>AT1G67340.1 | Symbols:  | HCP-like superfamily protein with
           MYND-type zinc finger | chr1:25230323-25231622 FORWARD
           LENGTH=379
          Length = 379

 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 143/179 (79%)

Query: 48  TSGDDHFESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLNSLVLAKASSRIF 107
           T+G D  +S+PDDLVI                  VL+TCKRL  L +N +VL++ S +  
Sbjct: 38  TTGADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAI 97

Query: 108 SIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHARAL 167
           +++A +WSE +HRFLK+C DAG++EACYTLGMIRFYCLQNRG+GASLMAKAAISSHA AL
Sbjct: 98  AVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPAL 157

Query: 168 YSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGYGCRKNIIEG 226
           YSLAVIQFNGSGG+K+DKDLRAGVALCARAAFLGH+DALRE+GHCLQDGYG  +N+ EG
Sbjct: 158 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEG 216


>AT5G50450.1 | Symbols:  | HCP-like superfamily protein with
           MYND-type zinc finger | chr5:20543519-20544698 REVERSE
           LENGTH=336
          Length = 336

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 146/191 (76%)

Query: 36  LTRKRQKKSPAATSGDDHFESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLN 95
           L +K++ ++    + ++HFE L DDL+I                  VL TCKRLN LGL+
Sbjct: 4   LNKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLH 63

Query: 96  SLVLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLM 155
            LVL+KA ++  ++ A+ WS+S+H+FLK C +AGN++A Y+LGMIRFYCLQN  SGASLM
Sbjct: 64  PLVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLM 123

Query: 156 AKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQD 215
           AKAAI SHA ALYSL+VIQFNGSGG+K+DK+LRAGVALCAR+A+LGH+DALRE+GHCLQD
Sbjct: 124 AKAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQD 183

Query: 216 GYGCRKNIIEG 226
           GYG  +++ EG
Sbjct: 184 GYGVPRDVSEG 194