Miyakogusa Predicted Gene

Lj0g3v0057319.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0057319.1 Non Chatacterized Hit- tr|B9RF70|B9RF70_RICCO
Always early, putative OS=Ricinus communis
GN=RCOM_143,55.43,4e-17,SANT,SANT domain; LIN-9-RELATED,NULL;
LIN-9,NULL; seg,NULL; Homeodomain-like,Homeodomain-like; no
de,CUFF.2507.1
         (90 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05380.4 | Symbols: ALY2 | DIRP ;Myb-like DNA-binding domain ...    97   3e-21
AT3G05380.5 | Symbols: ALY2 | DIRP ;Myb-like DNA-binding domain ...    97   3e-21
AT3G05380.2 | Symbols: ALY2, ATALY2 | DIRP ;Myb-like DNA-binding...    97   3e-21
AT3G05380.1 | Symbols: ALY2, ATALY2 | DIRP ;Myb-like DNA-binding...    94   3e-20
AT5G27610.1 | Symbols: ATALY1, ALY1 | DIRP ;Myb-like DNA-binding...    89   5e-19
AT3G21430.2 | Symbols: ATALY3, ALY3 | DNA binding | chr3:7544800...    83   4e-17

>AT3G05380.4 | Symbols: ALY2 | DIRP ;Myb-like DNA-binding domain |
          chr3:1540562-1546139 FORWARD LENGTH=1052
          Length = 1052

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 3/91 (3%)

Query: 1  MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNXXXXXXXXXXXXXGSQWSKEELQRFYEAYR 60
          MAP +KSRSVNKR +N  + SP KD   S              G QW++ EL+RFY+AYR
Sbjct: 1  MAPVRKSRSVNKRFTN--ETSPRKDAGKSKKNKLRKKKLSDKLGPQWTRLELERFYDAYR 58

Query: 61 KYGKEWKKVASAVRN-RSIEMVEALYNLNRV 90
          K+G+EW++VA+A+RN RS++MVEAL+N+NR 
Sbjct: 59 KHGQEWRRVAAAIRNSRSVDMVEALFNMNRA 89


>AT3G05380.5 | Symbols: ALY2 | DIRP ;Myb-like DNA-binding domain |
          chr3:1540562-1546139 FORWARD LENGTH=1052
          Length = 1052

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 3/91 (3%)

Query: 1  MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNXXXXXXXXXXXXXGSQWSKEELQRFYEAYR 60
          MAP +KSRSVNKR +N  + SP KD   S              G QW++ EL+RFY+AYR
Sbjct: 1  MAPVRKSRSVNKRFTN--ETSPRKDAGKSKKNKLRKKKLSDKLGPQWTRLELERFYDAYR 58

Query: 61 KYGKEWKKVASAVRN-RSIEMVEALYNLNRV 90
          K+G+EW++VA+A+RN RS++MVEAL+N+NR 
Sbjct: 59 KHGQEWRRVAAAIRNSRSVDMVEALFNMNRA 89


>AT3G05380.2 | Symbols: ALY2, ATALY2 | DIRP ;Myb-like DNA-binding
          domain | chr3:1540562-1546139 FORWARD LENGTH=1052
          Length = 1052

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 3/91 (3%)

Query: 1  MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNXXXXXXXXXXXXXGSQWSKEELQRFYEAYR 60
          MAP +KSRSVNKR +N  + SP KD   S              G QW++ EL+RFY+AYR
Sbjct: 1  MAPVRKSRSVNKRFTN--ETSPRKDAGKSKKNKLRKKKLSDKLGPQWTRLELERFYDAYR 58

Query: 61 KYGKEWKKVASAVRN-RSIEMVEALYNLNRV 90
          K+G+EW++VA+A+RN RS++MVEAL+N+NR 
Sbjct: 59 KHGQEWRRVAAAIRNSRSVDMVEALFNMNRA 89


>AT3G05380.1 | Symbols: ALY2, ATALY2 | DIRP ;Myb-like DNA-binding
          domain | chr3:1540562-1546139 FORWARD LENGTH=1051
          Length = 1051

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 4/91 (4%)

Query: 1  MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNXXXXXXXXXXXXXGSQWSKEELQRFYEAYR 60
          MAP +KSRSVNKR +N  + SP KD    +             G QW++ EL+RFY+AYR
Sbjct: 1  MAPVRKSRSVNKRFTN--ETSPRKDA-GKSKKNKLRKKLSDKLGPQWTRLELERFYDAYR 57

Query: 61 KYGKEWKKVASAVRN-RSIEMVEALYNLNRV 90
          K+G+EW++VA+A+RN RS++MVEAL+N+NR 
Sbjct: 58 KHGQEWRRVAAAIRNSRSVDMVEALFNMNRA 88


>AT5G27610.1 | Symbols: ATALY1, ALY1 | DIRP ;Myb-like DNA-binding
          domain | chr5:9764852-9769706 FORWARD LENGTH=971
          Length = 971

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 3/90 (3%)

Query: 1  MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNXXXXXXXXXXXXXGSQWSKEELQRFYEAYR 60
          MAPT+KS+SVNKR +N  + SP+ +  +++             G QW+K EL RFY+AYR
Sbjct: 1  MAPTRKSKSVNKRFTN--EASPDINFGSASKTKQRKKKLADKLGPQWTKRELVRFYDAYR 58

Query: 61 KYGKEWKKVASAVR-NRSIEMVEALYNLNR 89
          KY  +WKKVA+AVR NRS+EMVE L+ +NR
Sbjct: 59 KYVGDWKKVAAAVRNNRSVEMVETLFCMNR 88


>AT3G21430.2 | Symbols: ATALY3, ALY3 | DNA binding |
          chr3:7544800-7552841 REVERSE LENGTH=1132
          Length = 1132

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%)

Query: 1  MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNXXXXXXXXXXXXXGSQWSKEELQRFYEAYR 60
          MAP++  +S  K+   +  +SP KD  + +             G QWSKEEL+RFYE YR
Sbjct: 1  MAPSRSKKSKYKKKPRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYR 60

Query: 61 KYGKEWKKVASAVRNRSIEMVEALYNLNRV 90
          K+GKEWKKVA  V +RS EMVEALY +N+ 
Sbjct: 61 KFGKEWKKVAGFVHSRSAEMVEALYTMNKA 90