Miyakogusa Predicted Gene
- Lj0g3v0056929.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0056929.1 tr|G7JB15|G7JB15_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_3g107100 PE=4
SV=1,63.64,0.000000000004,FAMILY NOT NAMED,NULL; FBD,FBD; domain in
FBox and BRCT domain containing pl,FBD; seg,NULL,5713_g.1
(92 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26920.1 | Symbols: | FBD / Leucine Rich Repeat domains cont... 50 4e-07
AT3G26920.2 | Symbols: | FBD / Leucine Rich Repeat domains cont... 49 5e-07
AT4G00160.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 8e-07
AT3G52670.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich... 48 1e-06
AT4G15060.1 | Symbols: | CONTAINS InterPro DOMAIN/s: FBD (Inter... 47 2e-06
AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:19... 47 4e-06
AT5G56430.1 | Symbols: | F-box/FBD-like domains containing prot... 45 7e-06
AT3G50710.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 45 7e-06
AT5G56452.2 | Symbols: | FBD-like domain family protein | chr5:... 45 1e-05
>AT3G26920.1 | Symbols: | FBD / Leucine Rich Repeat domains
containing protein | chr3:9921241-9922429 FORWARD
LENGTH=340
Length = 340
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 5 ENWADPDFVPECLLLNLKTCSFRYFE-DLEVELQLARYILKNARVLQ 50
E W +P VPECLLL+L+T + +E LE E++LA+YIL+NAR L+
Sbjct: 258 EKWNEPKNVPECLLLHLETFVWTCYEGKLENEIELAKYILRNARRLK 304
>AT3G26920.2 | Symbols: | FBD / Leucine Rich Repeat domains
containing protein | chr3:9921241-9922429 FORWARD
LENGTH=301
Length = 301
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 5 ENWADPDFVPECLLLNLKTCSFRYFE-DLEVELQLARYILKNARVLQ 50
E W +P VPECLLL+L+T + +E LE E++LA+YIL+NAR L+
Sbjct: 219 EKWNEPKNVPECLLLHLETFVWTCYEGKLENEIELAKYILRNARRLK 265
>AT4G00160.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr4:63465-65365 FORWARD
LENGTH=453
Length = 453
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 7 WADPDFVPECLLLNLKTCSFRYFE-DLEVELQLARYILKNARVLQTMKILTGPAISRRQI 65
W +P +VPECLL +L+T +R F+ E E ++A YILKNAR L T P S
Sbjct: 356 WNEPKYVPECLLSHLETFVWRRFDWGREEEKEIATYILKNARRLNKATFSTNPVNSEELD 415
Query: 66 KM 67
K+
Sbjct: 416 KL 417
>AT3G52670.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich
Repeat domains containing protein |
chr3:19525247-19526737 FORWARD LENGTH=384
Length = 384
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 5 ENWADPDFVPECLLLNLKTCSF-RYFEDLEVELQLARYILKNARVLQTMKILTGPAISR 62
E W +P +VPECLL +L+T + RY + E E ++A YIL+NAR L+ I T P S+
Sbjct: 294 EKWNEPKYVPECLLSHLETFVWIRYDWEREEEKEVATYILRNARWLKKGTISTNPIESK 352
>AT4G15060.1 | Symbols: | CONTAINS InterPro DOMAIN/s: FBD
(InterPro:IPR013596), F-box domain, Skp2-like
(InterPro:IPR022364), FBD-like (InterPro:IPR006566),
Leucine-rich repeat 2 (InterPro:IPR013101); BEST
Arabidopsis thaliana protein match is: FBD, F-box and
Leucine Rich Repeat domains containing protein
(TAIR:AT1G55660.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:8599035-8601761 FORWARD LENGTH=539
Length = 539
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 11 DFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILTGPAISRRQIKMIRE 70
+FVPECLL +L+T + + LA+YIL+NAR L+T IL PA+ + MI+E
Sbjct: 104 NFVPECLLSSLQTFKWTGIHGSLKVMDLAKYILRNARCLKTATILFQPALETERETMIQE 163
>AT3G52690.1 | Symbols: | RNI-like superfamily protein |
chr3:19530736-19531811 FORWARD LENGTH=299
Length = 299
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 7 WADPDFVPECLLLNLKTCSF-RYFEDLEVELQLARYILKNARVLQTMKILTGPAISRRQI 65
W +P VPECLL LK + Y + EVE ++A YILKNAR L+ + T P S+
Sbjct: 212 WNEPKNVPECLLSQLKMFVWTSYHWESEVEKEVATYILKNARQLKNVSFSTRPIHSKEHN 271
Query: 66 KM 67
K+
Sbjct: 272 KL 273
>AT5G56430.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:22853323-22854575 REVERSE LENGTH=360
Length = 360
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 7 WADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILTGPAIS-RRQI 65
W P+ VPECLL++L+T + ++ + E + +Y+LKN ++TM I ++ +I
Sbjct: 277 WEQPNSVPECLLVSLETVKWILYKGTQEEKDVVKYLLKNGNFIKTMSIRFSSVVTLEERI 336
Query: 66 KMIREXXXXXXXXXXRCQI 84
+ E RCQ+
Sbjct: 337 HIPMEFEFMGRINSSRCQL 355
>AT3G50710.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr3:18845199-18846673
REVERSE LENGTH=427
Length = 427
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 5 ENWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQT 51
E+W +P VP+CLL +L ++Y+ + E ++ YILKNAR L+T
Sbjct: 344 EHWEEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKT 390
>AT5G56452.2 | Symbols: | FBD-like domain family protein |
chr5:22860483-22861336 REVERSE LENGTH=226
Length = 226
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 5 ENWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQT 51
+W P VPECL L+L T ++Y+ + E ++ YILKNAR L+T
Sbjct: 144 SHWRGPISVPECLRLHLSTFEWKYYNGRDEEKKIVAYILKNARQLKT 190